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Bacterial Toxin-Antitoxin Systems: More Than Selfish Entities?
Laurence Van Melderen et al.
PLOS GENETICS (2009)
A Novel Mechanism of Transposon-Mediated Gene Activation
Zhongge Zhang et al.
PLOS GENETICS (2009)
Gene cassettes and cassette arrays in mobile resistance integrons
Sally R. Partridge et al.
FEMS MICROBIOLOGY REVIEWS (2009)
Genomic islands: tools of bacterial horizontal gene transfer and evolution
Mario Juhas et al.
FEMS MICROBIOLOGY REVIEWS (2009)
Determinants of phase variation rate and the fitness implications of differing rates for bacterial pathogens and commensals
Christopher D. Bayliss
FEMS MICROBIOLOGY REVIEWS (2009)
Genomics and Evolution of Heritable Bacterial Symbionts
Nancy A. Moran et al.
ANNUAL REVIEW OF GENETICS (2008)
Individuality in Bacteria
Carla J. Davidson et al.
ANNUAL REVIEW OF GENETICS (2008)
Phase and antigenic variation mediated by genome modifications
Florence Wisniewski-Dye et al.
ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY (2008)
Identification of mobile elements and pseudogenes in the Shewanella oneidensis MR-1 genome
Margaret F. Romine et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2008)
Nezha, a novel active miniature inverted-repeat transposable element in cyanobacteria
Fengfeng Zhou et al.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2008)
The impact of horizontal gene transfer in shaping operons and protein interaction networks - direct evidence of preferential attachment
Wagied Davids et al.
BMC EVOLUTIONARY BIOLOGY (2008)
Persistence drives gene clustering in bacterial genomes
Gang Fang et al.
BMC GENOMICS (2008)
The Bacterial Chromosome
Milton H. Saier
CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY (2008)
Determination of the Genome Sequence of Porphyromonas gingivalis Strain ATCC 33277 and Genomic Comparison with Strain W83 Revealed Extensive Genome Rearrangements in P-gingivalis
Mariko Naito et al.
DNA RESEARCH (2008)
Blattabacteria, the endosymbionts of cockroaches, have small genome sizes and high genome copy numbers
Maria Jose Lopez-Sanchez et al.
ENVIRONMENTAL MICROBIOLOGY (2008)
Population structure, levels of selection, and the evolution of intracellular symbionts
Brendan O'Fallon
EVOLUTION (2008)
Laterally transferred genomic islands in Xanthomonadales related to pathogenicity and primary metabolism
Wanessa C. Lima et al.
FEMS MICROBIOLOGY LETTERS (2008)
A recently active miniature inverted-repeat transposable element, Chunjie, inserted into an operon without disturbing the operon structure in Geobacter uraniireducens Rf4
Yong Chen et al.
GENETICS (2008)
Phage-associated mutator phenotype in group A streptococcus
Julie Scott et al.
JOURNAL OF BACTERIOLOGY (2008)
Chromosomal toxin-antitoxin systems may act as antiaddiction modules
Manuel Saavedra De Bast et al.
JOURNAL OF BACTERIOLOGY (2008)
Systematic survey for novel types of prokaryotic retroelements based on gene neighborhood and protein architecture
Kenji K. Kojima et al.
MOLECULAR BIOLOGY AND EVOLUTION (2008)
Diversity-generating retroelement homing regenerates target sequences for repeated rounds of codon rewriting and protein diversification
Huatao Guo et al.
MOLECULAR CELL (2008)
SbcCD causes a double-strand break at a DNA palindrome in the Escherichia coli chromosome
John K. Eykelenboom et al.
MOLECULAR CELL (2008)
A small SOS-induced toxin is targeted against the inner membrane in Escherichia coli
Cecilia Unoson et al.
MOLECULAR MICROBIOLOGY (2008)
Small mobile sequences in bacteria display diverse structure/function motifs
Nicholas Delihas
MOLECULAR MICROBIOLOGY (2008)
Mechanism of homologous recombination from the RecA-ssDNA/dsDNA structures
Zhucheng Chen et al.
NATURE (2008)
Learning how to live together: genomic insights into prokaryote-animal symbioses
Andres Moya et al.
NATURE REVIEWS GENETICS (2008)
CRISPR - a widespread system that provides acquired resistance against phages in bacteria and archaea
Rotem Sorek et al.
NATURE REVIEWS MICROBIOLOGY (2008)
Small Toxic Proteins and the Antisense RNAs That Repress Them
Elizabeth M. Fozo et al.
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2008)
RecBCD Enzyme and the Repair of Double-Stranded DNA Breaks
Mark S. Dillingham et al.
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2008)
The RecBCD and SbcCD DNases suppress homology-facilitated illegitimate recombination during natural transformation of Acinetobacter baylyi
Klaus Harms et al.
MICROBIOLOGY-SGM (2008)
Expression of the Helicobacter pylori adhesin SabA is controlled via phase variation and the ArsRS signal transduction system
Andrew C. Goodwin et al.
MICROBIOLOGY-SGM (2008)
Survey of group I and group II introns in 29 sequenced genomes of the Bacillus cereus group:: insights into their spread and evolution
Nicolas J. Tourasse et al.
NUCLEIC ACIDS RESEARCH (2008)
Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world
Eugene V. Koonin et al.
NUCLEIC ACIDS RESEARCH (2008)
A diversity of uncharacterized reverse transcriptases in bacteria
Dawn M. Simon et al.
NUCLEIC ACIDS RESEARCH (2008)
Insight into Microevolution of Yersinia pestis by Clustered Regularly Interspaced Short Palindromic Repeats
Yujun Cui et al.
PLOS ONE (2008)
Bacterial addiction module toxin Doc inhibits translation elongation through its association with the 30S ribosomal subunit
Mohan Liu et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Modular networks and cumulative impact of lateral transfer in prokaryote genome evolution
Tal Dagan et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Virus population dynamics and acquired virus resistance in natural microbial communities
Anders F. Andersson et al.
SCIENCE (2008)
Lateral gene transfer challenges principles of microbial systematics
Eric Bapteste et al.
TRENDS IN MICROBIOLOGY (2008)
Diversity, activity, and evolution of CRISPR loci in Streptococcus thermophilus
Philippe Horvath et al.
JOURNAL OF BACTERIOLOGY (2008)
Phage response to CRISPR-Encoded resistance in Streptococcus thermophilus
Helene Deveau et al.
JOURNAL OF BACTERIOLOGY (2008)
Extensive proliferation of transposable elements in heritable bacterial symbionts
Gordon R. Plague et al.
JOURNAL OF BACTERIOLOGY (2008)
Fur regulates expression of the Salmonella pathogenicity island 1 type III secretion system through HilD
Jeremy R. Ellermeier et al.
JOURNAL OF BACTERIOLOGY (2008)
Chromosome structuring limits genome plasticity in Escherichia coli
Emilie Esnault et al.
PLOS GENETICS (2007)
Bacterial DNA repair by non-homologous end joining
Stewart Shuman et al.
NATURE REVIEWS MICROBIOLOGY (2007)
Ectopic gene conversions in bacterial genomes
Robert T. Morris et al.
GENOME (2007)
Implication of quorum sensing in Salmonella enterica serovar typhimurium virulence:: the luxS gene is necessary for expression of genes in pathogenicity island 1
Jeongjoon Choi et al.
INFECTION AND IMMUNITY (2007)
Deletion of the meningococcal fetA gene used for antigen sequence typing of invasive and commensal isolates from Germany:: Frequencies and mechanisms
Heike Claus et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2007)
How gene order is influenced by the biophysics of transcription regulation
Grigory Kolesov et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Genome dynamics of Campylobacter jejuni in response to bacteriophage predation
Andrew E. Scott et al.
PLOS PATHOGENS (2007)
Diversity-generating retroelements
Bob Medhekar et al.
CURRENT OPINION IN MICROBIOLOGY (2007)
Hypervariation and phase variation in the bacteriophage 'resistome'
Paul A. Hoskisson et al.
CURRENT OPINION IN MICROBIOLOGY (2007)
Integrons: mobilizable platforms that promote genetic diversity in bacteria
Yan Boucher et al.
TRENDS IN MICROBIOLOGY (2007)
Recombination proteins and rescue of arrested replication forks
Benedicte Michel et al.
DNA REPAIR (2007)
Cutting edge: Natural DNA repetitive extragenic sequences from Gram-negative pathogens strongly stimulate TLR9
Mattias Magnusson et al.
JOURNAL OF IMMUNOLOGY (2007)
Silencing of xenogeneic DNA by H-NS - facilitation of lateral gene transfer in bacteria by a defense system that recognizes foreign DNA
William Wiley Navarre et al.
GENES & DEVELOPMENT (2007)
Proofreading and secondary structure processing determine the orientation dependence of CAG•CTG trinucleotide repeat instability in Escherichia coli
Rabaab Zahra et al.
GENETICS (2007)
Regulation of dev, an operon that includes genes essential for Myxococcus xanthus development and CRISPR-associated genes and repeats
Poorna Viswanathan et al.
JOURNAL OF BACTERIOLOGY (2007)
Transcription activation mediated by a cyclic AMP receptor protein from Thermus thermophilus HB8
Akeo Shinkai et al.
JOURNAL OF BACTERIOLOGY (2007)
Interspecies spread of CTX-M-32 extended-spectrum β-lactamase and the role of the insertion sequence IS1 in down-regulating blaCTX-M gene expression
Ana Fernandez et al.
JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2007)
Gene expression in vivo shows that Helicobacter pylori colonizes an acidic niche on the gastric surface
David R. Scott et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Products of the Escherichia coli acid fitness island attenuate metabolite stress at extremely low pH and mediate a cell density-dependent acid resistance
Aaron K. Mates et al.
JOURNAL OF BACTERIOLOGY (2007)
CRISPR provides acquired resistance against viruses in prokaryotes
Rodolphe Barrangou et al.
SCIENCE (2007)
Gene cluster analysis method identifies horizontally transferred genes with high reliability and indicates that they provide the main mechanism of operon gain in 8 species of γ-proteobacteria
Keiichi Homma et al.
MOLECULAR BIOLOGY AND EVOLUTION (2007)
Transposon Tn7 is widespread in diverse bacteria and forms genomic islands
Adam R. Parks et al.
JOURNAL OF BACTERIOLOGY (2007)
Pattern pluralism and the Tree of Life hypothesis
W. Ford Doolittle et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Chromosomal context directs high-frequency precise excision of IS492 in Pseudoalteromonas atlantica
Brian P. Higgins et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Importance of widespread gene transfer agent genes in α-proteobacteria
Andrew S. Lang et al.
TRENDS IN MICROBIOLOGY (2007)
Ancestral genome sizes specify the minimum rate of lateral gene transfer during prokaryote evolution
Tal Dagan et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Prophage-like gene transfer agents - Novel mechanisms of gene exchange for Methanococcus, Desulfovibrio, Brachyspira, and Rhodobacter species
Thad B. Stanton
ANAEROBE (2007)
Bacterial group II introns: not just splicing
Nicolas Toro et al.
FEMS MICROBIOLOGY REVIEWS (2007)
Bacteria, sex, and systematics
L. R. Franklin
PHILOSOPHY OF SCIENCE (2007)
Insertion sequence-driven diversification creates a globally dispersed emerging multiresistant subspecies of E-faecium
Helen L. Leavis et al.
PLOS PATHOGENS (2007)
The bacterial species definition in the genomic era
Konstantinos T. Konstantinidis et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2006)
Pathogenicity islands: a molecular toolbox for bacterial virulence
Ohad Gal-Mor et al.
CELLULAR MICROBIOLOGY (2006)
Impact of the excision of an ancient repeat insertion on Rickettsia conorii guanylate kinase activity
Chantal Abergel et al.
MOLECULAR BIOLOGY AND EVOLUTION (2006)
Insertion sequences in prokaryotic genomes
Patricia Siguier et al.
CURRENT OPINION IN MICROBIOLOGY (2006)
Strict host-symbiont cospeciation and reductive genome evolution in insect gut bacteria
Takahiro Hosokawa et al.
PLOS BIOLOGY (2006)
Two higBA loci in the Vibrio cholerae superintegron encode mRNA cleaving enzymes and can stabilize plasmids
Mikkel Christensen-Dalsgaard et al.
MOLECULAR MICROBIOLOGY (2006)
A phase-variable mechanism controlling the Campylobacter jejuni FlgR response regulator influences commensalism
David R. Hendrixson
MOLECULAR MICROBIOLOGY (2006)
Special delivery: vesicle trafficking in prokaryotes
Lauren M. Mashburn-Warren et al.
MOLECULAR MICROBIOLOGY (2006)
Integrons: agents of bacterial evolution
Didier Mazel
NATURE REVIEWS MICROBIOLOGY (2006)
Pathogenicity island integrase cross-talk: a potential new tool for virulence modulation
Janet M. Manson et al.
MOLECULAR MICROBIOLOGY (2006)
Shutdown decay of mRNA
Ciaran Condon
MOLECULAR MICROBIOLOGY (2006)
Collective evolution and the genetic code
Kalin Vetsigian et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
The conjugative transposon Tn5397 has a strong preference for integration into its Clostridium difficile target site
Hongmei Wang et al.
JOURNAL OF BACTERIOLOGY (2006)
Mechanisms of tandem repeat instability in bacteria
M. Bichara et al.
MUTATION RESEARCH-FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS (2006)
Reciprocal illumination in the gene content tree of life
E. Kurt Lienau et al.
SYSTEMATIC BIOLOGY (2006)
The repetitive DNA elements called CRISPRs and their associated genes: Evidence of horizontal transfer among prokaryotes
James S. Godde et al.
JOURNAL OF MOLECULAR EVOLUTION (2006)
Regulated expression of glutamyl-tRNA synthetase is directed by a mobile genetic element in the cyanobacterium Tolypothrix sp PCC 7601
Ignacio Luque et al.
MOLECULAR MICROBIOLOGY (2006)
Visualizing and assessing phylogenetic congruence of core gene sets:: A case study of the γ-proteobacteria
E Susko et al.
MOLECULAR BIOLOGY AND EVOLUTION (2006)
Chromosome evolution in the Thermotogales:: Large-scale inversions and strain diversification of CRISPR sequences
RT DeBoy et al.
JOURNAL OF BACTERIOLOGY (2006)
Bacterial repetitive extragenic palindromic sequences are DNA targets for Insertion Sequence elements
Raquel Tobes et al.
BMC GENOMICS (2006)
Highly efficient protein trans-splicing by a naturally split DnaE intein from Nostoc punctiforme
H Iwai et al.
FEBS LETTERS (2006)
Within-host dynamics of antigenic variation
SA Frank et al.
INFECTION GENETICS AND EVOLUTION (2006)
Flja-mediated posttranscriptional control of phase 1 flagellin expression in flagellar phase variation of Salmonella enterica serovar typhimurium
S Yamamoto et al.
JOURNAL OF BACTERIOLOGY (2006)
Re-examining the role and random nature of phase variation
MW van der Woude
FEMS MICROBIOLOGY LETTERS (2006)
Mutagenesis via IS transposition in Deinococcus radiodurans
S Mennecier et al.
MOLECULAR MICROBIOLOGY (2006)
Autoinducer 2 controls biofilm formation in Escherichia coli through a novel motility quorum-sensing regulator (MqsR, B3022)
AFG Barrios et al.
JOURNAL OF BACTERIOLOGY (2006)
A comparative categorization of protein function encoded in bacterial or archeal genomic islands
R Merkl
JOURNAL OF MOLECULAR EVOLUTION (2006)
Meningococcal genome dynamics
T Davidsen et al.
NATURE REVIEWS MICROBIOLOGY (2006)
Integron cassette insertion: a recombination process involving a folded single strand substrate
M Bouvier et al.
EMBO JOURNAL (2005)
Ancient gene duplications and the root(s) of the tree of life
O Zhaxybayeva et al.
PROTOPLASMA (2005)
For better or worse: genomic consequences of intracellular mutualism and parasitism
JJ Wernegreen
CURRENT OPINION IN GENETICS & DEVELOPMENT (2005)
Adaptive evolution of bacterial metabolic networks by horizontal gene transfer
C Pál et al.
NATURE GENETICS (2005)
Enterobacterial repetitive intergenic consensus sequence repeats in yersiniae: Genomic organization and functional properties
E De Gregorio et al.
JOURNAL OF BACTERIOLOGY (2005)
A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes
DH Haft et al.
PLOS COMPUTATIONAL BIOLOGY (2005)
Highways of gene sharing in prokaryotes
RG Beiko et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Tn5386, a novel Tn916-like mobile element in Enterococcus faecium D344R that interacts with Tn916 to yield a large genomic deletion
LB Rice et al.
JOURNAL OF BACTERIOLOGY (2005)
Heterocyst-specific excision of the Anabaena sp strain PCC 7120 hupL element requires xisC
CD Carrasco et al.
JOURNAL OF BACTERIOLOGY (2005)
The biology of restriction and anti-restriction
MR Tock et al.
CURRENT OPINION IN MICROBIOLOGY (2005)
The net of life: Reconstructing the microbial phylogenetic network
V Kunin et al.
GENOME RESEARCH (2005)
What tangled web: barriers to rampant horizontal gene transfer
CG Kurland
BIOESSAYS (2005)
Operon formation is driven by co-regulation and not by horizontal gene transfer
MN Price et al.
GENOME RESEARCH (2005)
Evolutionary origins of genomic repertoires in bacteria
E Lerat et al.
PLOS BIOLOGY (2005)
Prokaryotic toxin-antitoxin stress response loci
K Gerdes et al.
NATURE REVIEWS MICROBIOLOGY (2005)
Extensive DNA inversions in the B. fragilis genome control variable gene expression
AM Cerdeño-Tárraga et al.
SCIENCE (2005)
Characterization of a 4 kb Variant of the nifD element in Anabaena sp strain ATCC 33047
BJ Henson et al.
CURRENT MICROBIOLOGY (2005)
Homing endonuclease structure and function
BL Stoddard
QUARTERLY REVIEWS OF BIOPHYSICS (2005)
The natural history of group I introns
P Haugen et al.
TRENDS IN GENETICS (2005)
Horizontal gene transfer, genome innovation and evolution
JP Gogarten et al.
NATURE REVIEWS MICROBIOLOGY (2005)
Mobile DNA in obligate intracellular bacteria
SR Bordenstein et al.
NATURE REVIEWS MICROBIOLOGY (2005)
Group II intron retroelements: function and diversity
AR Robart et al.
CYTOGENETIC AND GENOME RESEARCH (2005)
Retrons, msDNA, and the bacterial genome
BC Lampson et al.
CYTOGENETIC AND GENOME RESEARCH (2005)
Molecular evolution of Vibrio pathogenicity island-2 (VPI-2): mosaic structure among Vibrio cholerae and Vibrio mimicus natural isolates
WS Jermyn et al.
MICROBIOLOGY-SGM (2005)
Toxin-antitoxin loci are highly abundant in free-living but lost from host-associated prokaryotes
DP Pandey et al.
NUCLEIC ACIDS RESEARCH (2005)
Genomic islands in pathogenic and environmental microorganisms
U Dobrindt et al.
NATURE REVIEWS MICROBIOLOGY (2004)
Phylogenomics of the reproductive parasite Wolbachia pipientis wMel:: A streamlined genome overrun by mobile genetic elements
M Wu et al.
PLOS BIOLOGY (2004)
Tropism switching in Bordetella bacteriophage defines a family of diversity-generating retroelements
S Doulatov et al.
NATURE (2004)
The ring of life provides evidence for a genome fusion origin of eukaryotes
MC Rivera et al.
NATURE (2004)
Reversible phase variation in the phnE gene, which is required for phosphonate metabolism in Escherichia coli K-12
S Iqbal et al.
JOURNAL OF BACTERIOLOGY (2004)
Antibiotic-induced lateral transfer of antibiotic resistance
PJ Hastings et al.
TRENDS IN MICROBIOLOGY (2004)
Adaptive point mutation and adaptive amplification pathways in the Escherichia coli Lac system:: Stress responses producing genetic change
SM Rosenberg et al.
JOURNAL OF BACTERIOLOGY (2004)
Phase and antigenic variation in bacteria
MW van der Woude et al.
CLINICAL MICROBIOLOGY REVIEWS (2004)
Genornic changes following host restriction in bacteria
NA Moran et al.
CURRENT OPINION IN GENETICS & DEVELOPMENT (2004)
Genome phylogenetic analysis based on extended gene contents
X Gu et al.
MOLECULAR BIOLOGY AND EVOLUTION (2004)
IS231-MIC231 elements from Bacillus cereus sensu lato are modular
D De Palmenaer et al.
MOLECULAR MICROBIOLOGY (2004)
Integrated regulatory responses of fimB to N-acetylneuraminic (sialic) acid and GlcNAc in Escherichia coli K-12
BK Sohanpal et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
Modulation of the mtrCDE-encoded efflux pump gene complex of Neisseria meningitidis due to a Correia element insertion sequence
CE Rouquette-Loughlin et al.
MOLECULAR MICROBIOLOGY (2004)
Evidence against the selfish operon theory
C Pál et al.
TRENDS IN GENETICS (2004)
SOS response promotes horizontal dissemination of antibiotic resistance genes
JW Beaber et al.
NATURE (2004)
The evolutionary fate of nonfunctional DNA in the bacterial endosymbiont Buchnera aphidicola
L Gómez-Valero et al.
MOLECULAR BIOLOGY AND EVOLUTION (2004)
Encoded errors: mutations and rearrangements mediated by misalignment at repetitive DNA sequences
ST Lovett
MOLECULAR MICROBIOLOGY (2004)
Pathogenicity islands in bacterial pathogenesis
H Schmidt et al.
CLINICAL MICROBIOLOGY REVIEWS (2004)
Genomic analysis of Bacteroides fragilis reveals extensive DNA inversions regulating cell surface adaptation
T Kuwahara et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
Bacteriophage flux in endosymbionts (Wolbachia):: Infection frequency, lateral transfer, and recombination rates
SR Bordenstein et al.
MOLECULAR BIOLOGY AND EVOLUTION (2004)
IS6110 functions as a mobile, monocyte-activated promoter in Mycobacterium tuberculosis
H Safi et al.
MOLECULAR MICROBIOLOGY (2004)
Principles of 3′ splice site selection and alternative splicing for an unusual group II intron from Bacillus anthracis
AR Robart et al.
RNA (2004)
Comprehensive analysis of pseudogenes in prokaryotes: widespread gene decay and failure of putative horizontally transferred genes
Y Liu et al.
GENOME BIOLOGY (2004)
Instability of pathogenicity islands in uropathogenic Escherichia coli 536
B Middendorf et al.
JOURNAL OF BACTERIOLOGY (2004)
From gene trees to organismal phylogeny in prokaryotes:: The case of the γ-proteobacteria
E Lerat et al.
PLOS BIOLOGY (2003)
Horizontal gene transfer accelerates genome innovation and evolution
R Jain et al.
MOLECULAR BIOLOGY AND EVOLUTION (2003)
Toxin-antitoxin loci as stress-response-elements: ChpAK/MazF and ChpBK cleave translated RNAs and are counteracted by tmRNA
SK Christensen et al.
JOURNAL OF MOLECULAR BIOLOGY (2003)
Ribonuclease III-mediated processing of specific Neisseria meningitidis rnRNAs
E De Gregorio et al.
BIOCHEMICAL JOURNAL (2003)
Toxins-antitoxins: Plasmid maintenance, programmed cell death, and cell cycle arrest
F Hayes
SCIENCE (2003)
Inteins as targets for potential antimycobacterial drugs
H Paulus
FRONTIERS IN BIOSCIENCE (2003)
Horizontal gene transfer: A critical view
CG Kurland et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
Phylogenetics and the cohesion of bacterial genomes
V Daubin et al.
SCIENCE (2003)
Transposases are responsible for the target specificity of IS1397 and ISKpn1 for two different types of palindromic units (PUs)
C Wilde et al.
NUCLEIC ACIDS RESEARCH (2003)
The balance of driving forces during genome evolution in prokaryotes
V Kunin et al.
GENOME RESEARCH (2003)
An appraisal of the potential for illegitimate recombination in bacterial genomes and its consequences: From duplications to genome reduction
EPC Rocha
GENOME RESEARCH (2003)
Efficient sporulation in Clostridium difficile requires disruption of the σK gene
JD Haraldsen et al.
MOLECULAR MICROBIOLOGY (2003)
Restriction-modification system in bacteriophage MB78
D Chaturvedi et al.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2003)
Multiplication of a restriction-modification gene complex
M Sadykov et al.
MOLECULAR MICROBIOLOGY (2003)
Genus-specific protein binding to the large clusters of DNA repeats (short regularly spaced repeats) present in Sulfolobus genomes
X Peng et al.
JOURNAL OF BACTERIOLOGY (2003)
Distribution and function of new bacterial intein-like protein domains
G Amitai et al.
MOLECULAR MICROBIOLOGY (2003)
Lateral gene transfer: when will adolescence end?
JG Lawrence et al.
MOLECULAR MICROBIOLOGY (2003)
Biocontrol traits of Pseudomonas spp. are regulated by phase variation
D van den Broek et al.
MOLECULAR PLANT-MICROBE INTERACTIONS (2003)
Transposition of DEH, a broad-host-range transposon flanked by ISPpu12, in Pseudomonas putida is associated with genomic rearrangements and dehalogenase gene silencing
AJ Weightman et al.
JOURNAL OF BACTERIOLOGY (2002)
Evolution of microbial genomes: Sequence acquisition and loss
OG Berg et al.
MOLECULAR BIOLOGY AND EVOLUTION (2002)
Association of different mobile elements to generate novel integrative elements
LB Rice
CELLULAR AND MOLECULAR LIFE SCIENCES (2002)
The role of conjugative transposons in the Enterobacteriaceae
JT Pembroke et al.
CELLULAR AND MOLECULAR LIFE SCIENCES (2002)
Isolation of the gene for the B12-dependent ribonucleotide reductase from Anabaena sp strain PCC 7120 and expression in Escherichia coli
FK Gleason et al.
JOURNAL OF BACTERIOLOGY (2002)
Prokaryotic evolution in light of gene transfer
JP Gogarten et al.
MOLECULAR BIOLOGY AND EVOLUTION (2002)
Integron-encoded Intl integrases preferentially recognize the adjacent cognate attl site in recombination with a 59-be site
CM Collis et al.
MOLECULAR MICROBIOLOGY (2002)
The clostridial mobilisable transposons
V Adams et al.
CELLULAR AND MOLECULAR LIFE SCIENCES (2002)
A partial copy of msDNA from a new retron element is likely a retrotransposed DNA found in the myxobacterium Nannocystis exedens
BC Lampson et al.
GENE (2002)
Microbial genome evolution: sources of variability
A Mira et al.
CURRENT OPINION IN MICROBIOLOGY (2002)
Identification of a DNA nonhomologous end-joining complex in bacteria
GR Weller et al.
SCIENCE (2002)
Genome trees and the Tree of Life
YI Wolf et al.
TRENDS IN GENETICS (2002)
A Rho-dependent phase-variable transcription terminator controls expression of the FimE recombinase in Escherichia coli
SA Joyce et al.
MOLECULAR MICROBIOLOGY (2002)
Assessment of virulence of uropathogenic Escherichia coli type 1 fimbrial mutants in which the invertible element is phase-locked on or off
NW Gunther et al.
INFECTION AND IMMUNITY (2002)
A phylogenomic approach to bacterial phylogeny:: Evidence of a core of genes sharing a common history
V Daubin et al.
GENOME RESEARCH (2002)
On the evolution of cells
CR Woese
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)
Comparative sequence analysis of the symbiosis island of Mesorhizobium loti strain R7A
JT Sullivan et al.
JOURNAL OF BACTERIOLOGY (2002)
Identification of the Clostridium perfringens genes involved in the adaptive response to oxidative stress
V Briolat et al.
JOURNAL OF BACTERIOLOGY (2002)
Microbial minimalism: Genome reduction in bacterial pathogens
NA Moran
CELL (2002)
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