Related references
Note: Only part of the references are listed.Changes in assembly processes in soil bacterial communities following a wildfire disturbance
Scott Ferrenberg et al.
ISME JOURNAL (2013)
FORUM: Microbiology The life beneath our feet
Janet K. Jansson
NATURE (2013)
Insights into the resistance and resilience of the soil microbial community
Bryan S. Griffiths et al.
FEMS MICROBIOLOGY REVIEWS (2013)
The Neutral-Niche Debate: A Philosophical Perspective
Paul L. Wennekes et al.
ACTA BIOTHEORETICA (2012)
Phylogenetic Clustering of Soil Microbial Communities by 16S rRNA but Not 16S rRNA Genes
Kristen M. DeAngelis et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2012)
Microbial Scout Hypothesis and Microbial Discovery
S. Buerger et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2012)
Species phylogenetic relatedness, priority effects, and ecosystem functioning
Jiaqi Tan et al.
ECOLOGY (2012)
A trait-based approach for modelling microbial litter decomposition
S. D. Allison
ECOLOGY LETTERS (2012)
Distance decay of similarity in freshwater communities: do macro- and microorganisms follow the same rules?
Anna Astorga et al.
GLOBAL ECOLOGY AND BIOGEOGRAPHY (2012)
The Inter-Valley Soil Comparative Survey: the ecology of Dry Valley edaphic microbial communities
Charles K. Lee et al.
ISME JOURNAL (2012)
Modelling the effect of size on the aerial dispersal of microorganisms
David M. Wilkinson et al.
JOURNAL OF BIOGEOGRAPHY (2012)
Ecological drift and local exposures drive enteric bacterial community differences within species of Galapagos iguanas
Emily W. Lankau et al.
MOLECULAR ECOLOGY (2012)
Diversity, stability and resilience of the human gut microbiota
Catherine A. Lozupone et al.
NATURE (2012)
Beyond biogeographic patterns: processes shaping the microbial landscape
China A. Hanson et al.
NATURE REVIEWS MICROBIOLOGY (2012)
Phylogenetic relatedness predicts priority effects in nectar yeast communities
Kabir G. Peay et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2012)
How Bacterial Lineages Emerge
R. Thane Papke et al.
SCIENCE (2012)
Population Genomics of Early Events in the Ecological Differentiation of Bacteria
B. Jesse Shapiro et al.
SCIENCE (2012)
Species Diversity, Invasion, and Alternative Community States in Sequentially Assembled Communities
Lin Jiang et al.
AMERICAN NATURALIST (2011)
Sources of Bacteria in Outdoor Air across Cities in the Midwestern United States
Robert M. Bowers et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2011)
Navigating the multiple meanings of beta diversity: a roadmap for the practicing ecologist
Marti J. Anderson et al.
ECOLOGY LETTERS (2011)
Community assembly: alternative stable states or alternative transient states?
Tadashi Fukami et al.
ECOLOGY LETTERS (2011)
Phylogenetic limiting similarity and competitive exclusion
Cyrille Violle et al.
ECOLOGY LETTERS (2011)
Global patterns in the biogeography of bacterial taxa
Diana R. Nemergut et al.
ENVIRONMENTAL MICROBIOLOGY (2011)
Phylogenetic Diversity and Metabolic Potential of Activated Sludge Microbial Communities in Full-Scale Wastewater Treatment Plants
Chao Yang et al.
ENVIRONMENTAL SCIENCE & TECHNOLOGY (2011)
Toward molecular trait-based ecology through integration of biogeochemical, geographical and metagenomic data
Jeroen Raes et al.
MOLECULAR SYSTEMS BIOLOGY (2011)
Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications
Pelin Yilmaz et al.
NATURE BIOTECHNOLOGY (2011)
Microbial seed banks: the ecological and evolutionary implications of dormancy
Jay T. Lennon et al.
NATURE REVIEWS MICROBIOLOGY (2011)
Balance of Neutral and Deterministic Components in the Dynamics of Activated Sludge Floc Assembly
Joaquin M. Ayarza et al.
MICROBIAL ECOLOGY (2011)
Global Distribution of Polaromonas Phylotypes - Evidence for a Highly Successful Dispersal Capacity
John L. Darcy et al.
PLOS ONE (2011)
The Phylogenetic Diversity of Metagenomes
Steven W. Kembel et al.
PLOS ONE (2011)
The Importance of Dispersal for Bacterial Community Composition and Functioning
Eva S. Lindstrom et al.
PLOS ONE (2011)
Disentangling the importance of ecological niches from stochastic processes across scales
Jonathan M. Chase et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2011)
Soil rotifer communities are extremely diverse globally but spatially autocorrelated locally
Michael S. Robeson et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Drivers of bacterial β-diversity depend on spatial scale
Jennifer B. H. Martiny et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Bacterial community assembly based on functional genes rather than species
Catherine Burke et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Disentangling the Drivers of β Diversity Along Latitudinal and Elevational Gradients
Nathan J. B. Kraft et al.
SCIENCE (2011)
The Unified Neutral Theory of Biodiversity and Biogeography at Age Ten
James Rosindell et al.
TRENDS IN ECOLOGY & EVOLUTION (2011)
Spatial patterns of bacterial richness and evenness in the NW Mediterranean Sea explored by pyrosequencing of the 16S rRNA
Thomas Pommier et al.
AQUATIC MICROBIAL ECOLOGY (2010)
A diversity of beta diversities: straightening up a concept gone awry. Part 1. Defining beta diversity as a function of alpha and gamma diversity
Hanna Tuomisto
ECOGRAPHY (2010)
Invisible invaders: non-pathogenic invasive microbes in aquatic and terrestrial ecosystems
Elena Litchman
ECOLOGY LETTERS (2010)
Assembly history dictates ecosystem functioning: evidence from wood decomposer communities
Tadashi Fukami et al.
ECOLOGY LETTERS (2010)
A global network of coexisting microbes from environmental and whole-genome sequence data
Samuel Chaffron et al.
GENOME RESEARCH (2010)
Species sorting affects bacterioplankton community composition as determined by 16S rDNA and 16S rRNA fingerprints
Jurg B. Logue et al.
ISME JOURNAL (2010)
Ecological and evolutionary factors underlying global and local assembly of denitrifier communities
Christopher M. Jones et al.
ISME JOURNAL (2010)
PANGEA: pipeline for analysis of next generation amplicons
Adriana Giongo et al.
ISME JOURNAL (2010)
Life history determines biogeographical patterns of soil bacterial communities over multiple spatial scales
A. Bissett et al.
MOLECULAR ECOLOGY (2010)
QIIME allows analysis of high-throughput community sequencing data
J. Gregory Caporaso et al.
NATURE METHODS (2010)
The ecological coherence of high bacterial taxonomic ranks
Laurent Philippot et al.
NATURE REVIEWS MICROBIOLOGY (2010)
Multivariate Cutoff Level Analysis (MultiCoLA) of large community data sets
Angelique Gobet et al.
NUCLEIC ACIDS RESEARCH (2010)
The Taxonomic and Functional Diversity of Microbes at a Temperate Coastal Site: A 'Multi-Omic' Study of Seasonal and Diel Temporal Variation
Jack A. Gilbert et al.
PLOS ONE (2010)
Combined niche and neutral effects in a microbial wastewater treatment community
Irina Dana Ofiteru et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Dormancy contributes to the maintenance of microbial diversity
Stuart E. Jones et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
CONCEPTUAL SYNTHESIS IN COMMUNITY ECOLOGY
Mark Vellend
QUARTERLY REVIEW OF BIOLOGY (2010)
Plot-scale manipulations of organic matter inputs to soils correlate with shifts in microbial community composition in a lowland tropical rain forest
Diana R. Nemergut et al.
SOIL BIOLOGY & BIOCHEMISTRY (2010)
Biogeography and habitat modelling of high-alpine bacteria
Andrew J. King et al.
NATURE COMMUNICATIONS (2010)
Is there a general theory of community ecology?
Joan Roughgarden
BIOLOGY & PHILOSOPHY (2009)
The merging of community ecology and phylogenetic biology
Jeannine Cavender-Bares et al.
ECOLOGY LETTERS (2009)
Microbial community structure in the North Pacific ocean
Mark V. Brown et al.
ISME JOURNAL (2009)
Microbial community structure and its functional implications
Jed A. Fuhrman
NATURE (2009)
Bacterial Succession on the Leaf Surface: A Novel System for Studying Successional Dynamics
Amanda J. Redford et al.
MICROBIAL ECOLOGY (2009)
A Constant Flux of Diverse Thermophilic Bacteria into the Cold Arctic Seabed
Casey Hubert et al.
SCIENCE (2009)
The Bacterial Species Challenge: Making Sense of Genetic and Ecological Diversity
Christophe Fraser et al.
SCIENCE (2009)
Linking microbial phylogeny to metabolic activity at the single-cell level by using enhanced element labeling-catalyzed reporter deposition fluorescence in situ hybridization (EL-FISH) and NanoSIMS
Sebastian Behrens et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2008)
Community assembly in the presence of disturbance: A microcosm experiment
Lin Jiang et al.
ECOLOGY (2008)
Temporal scaling of bacterial taxa is influenced by both stochastic and deterministic ecological factors
Christopher J. van der Gast et al.
ENVIRONMENTAL MICROBIOLOGY (2008)
The Concept of Taxon Invariance in Ecology: Do Diversity Patterns Vary with Changes in Taxonomic Resolution?
David Storch et al.
FOLIA GEOBOTANICA (2008)
The tragedy of the uncommon: understanding limitations in the analysis of microbial diversity
Stephen J. Bent et al.
ISME JOURNAL (2008)
Towards environmental systems biology of Shewanella
James K. Fredrickson et al.
NATURE REVIEWS MICROBIOLOGY (2008)
Resistance, resilience, and redundancy in microbial communities
Steven D. Allison et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Microbes on mountainsides: Contrasting elevational patterns of bacterial and plant diversity
Jessica A. Bryant et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Global patterns in the phylogenetic structure of island mammal assemblages
Marcel Cardillo et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2008)
Microbial biogeography: From taxonomy to traits
Jessica L. Green et al.
SCIENCE (2008)
Species divergence and the measurement of microbial diversity
Catherine A. Lozupone et al.
FEMS MICROBIOLOGY REVIEWS (2008)
Drought mediates the importance of stochastic community assembly
Jonathan M. Chase
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Species abundance distributions: moving beyond single prediction theories to integration within an ecological framework
Brian J. McGill et al.
ECOLOGY LETTERS (2007)
Cryptic population dynamics: Rapid evolution masks trophic interactions
Takehito Yoshida et al.
PLOS BIOLOGY (2007)
Global patterns in bacterial diversity
Catherine A. Lozupone et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Biogeochemical consequences of rapid microbial turnover and seasonal succession in soil
S. K. Schmidt et al.
ECOLOGY (2007)
Essay - The role of ecological theory in microbial ecology
James I. Prosser et al.
NATURE REVIEWS MICROBIOLOGY (2007)
Importance of rare and abundant populations for the structure and functional potential of freshwater bacterial communities
Katalin E. Szabo et al.
AQUATIC MICROBIAL ECOLOGY (2007)
Emergent biogeography of microbial communities in a model ocean
Michael J. Follows et al.
SCIENCE (2007)
Evolution of species interactions in a biofilm community
Susse Kirkelund Hansen et al.
NATURE (2007)
Increases in soil respiration following labile carbon additions linked to rapid shifts in soil microbial community composition
Cory C. Cleveland et al.
BIOGEOCHEMISTRY (2007)
Quantitative and qualitative beta diversity measures lead to different insights into factors that structure microbial communities
Catherine A. Lozupone et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)
Patterns and mechanisms of genetic and phenotypic differentiation in marine microbes
Martin F. Polz et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2006)
UniFrac - An online tool for comparing microbial community diversity in a phylogenetic context
Catherine Lozupone et al.
BMC BIOINFORMATICS (2006)
Taxa-area relationships for microbes: the unsampled and the unseen
Stephen Woodcock et al.
ECOLOGY LETTERS (2006)
Quantifying the roles of immigration and chance in shaping prokaryote community structure
WT Sloan et al.
ENVIRONMENTAL MICROBIOLOGY (2006)
Microbial biogeography:: putting microorganisms on the map
JBH Martiny et al.
NATURE REVIEWS MICROBIOLOGY (2006)
The diversity and biogeography of soil bacterial communities
N Fierer et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
Marine microbial diversity: can it be determined?
Carlos Pedros-Alio
TRENDS IN MICROBIOLOGY (2006)
UniFrac: a new phylogenetic method for comparing microbial communities
C Lozupone et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2005)
PCR-induced sequence artifacts and bias: Insights from comparison of two 16S rRNA clone libraries constructed from the same sample
SG Acinas et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2005)
Integrating environmental and spatial processes in ecological community dynamics
K Cottenie
ECOLOGY LETTERS (2005)
The contribution of species richness and composition to bacterial services
T Bell et al.
NATURE (2005)
Weak coupling between community composition and functioning of aquatic bacteria
S Langenheder et al.
LIMNOLOGY AND OCEANOGRAPHY (2005)
Genotypic diversity within a natural coastal bacterioplankton population
JR Thompson et al.
SCIENCE (2005)
Self-generated diversity produces 'insurance effects' in biofilm communities (vol 101, pg 16630, 2004)
BR Boles et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Big questions, small worlds: microbial model systems in ecology
CM Jessup et al.
TRENDS IN ECOLOGY & EVOLUTION (2004)
Methods of studying soil microbial diversity
JL Kirk et al.
JOURNAL OF MICROBIOLOGICAL METHODS (2004)
Spatial scaling of microbial eukaryote diversity
JL Green et al.
NATURE (2004)
A taxa-area relationship for bacteria
MC Horner-Devine et al.
NATURE (2004)
Status of the microbial census
PD Schloss et al.
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2004)
The metacommunity concept: a framework for multi-scale community ecology
MA Leibold et al.
ECOLOGY LETTERS (2004)
Assembly history interacts with ecosystem size to influence species diversity
T Fukami
ECOLOGY (2004)
Self-generated diversity produces insurance effects in biofilm communities
BR Boles et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
The importance of physical isolation to microbial diversification
RT Papke et al.
FEMS MICROBIOLOGY ECOLOGY (2004)
Partitioning species diversity across landscapes and regions:: A hierarchical analysis of α, β, and γ diversity
TO Crist et al.
AMERICAN NATURALIST (2003)
Geographic barriers isolate endemic populations of hyperthermophilic archaea
RJ Whitaker et al.
SCIENCE (2003)
The power of time: spatiotemporal scaling of species diversity
PB Adler et al.
ECOLOGY LETTERS (2003)
Genome sequence of the dissimilatory metal ion-reducing bacterium Shewanella oneidensis
JF Heidelberg et al.
NATURE BIOTECHNOLOGY (2002)
The frequency and characteristics of highly thermophilic bacteria in cool soil environments
R Marchant et al.
ENVIRONMENTAL MICROBIOLOGY (2002)
Estimating prokaryotic diversity and its limits
TP Curtis et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)
Fluorescence in situ hybridization and catalyzed reporter deposition for the identification of marine bacteria
A Pernthaler et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2002)
Global dispersal of free-living microbial eukaryote species
BJ Finlay
SCIENCE (2002)
Spatial scale dictates the productivity-biodiversity relationship
JM Chase et al.
NATURE (2002)
The role of selective pressure and selfish DNA in horizontal gene transfer and soil microbial community adaptation
C Rensing et al.
SOIL BIOLOGY & BIOCHEMISTRY (2002)
DNA extraction from soils: Old bias for new microbial diversity analysis methods
F Martin-Laurent et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2001)
rrndb: the Ribosomal RNA Operon Copy Number Database
JA Klappenbach et al.
NUCLEIC ACIDS RESEARCH (2001)
Lateral gene transfer and the nature of bacterial innovation
H Ochman et al.
NATURE (2000)