Related references
Note: Only part of the references are listed.A-to-I RNA editing occurs at over a hundred million genomic sites, located in a majority of human genes
Lily Bazak et al.
GENOME RESEARCH (2014)
Ensembl 2014
Paul Flicek et al.
NUCLEIC ACIDS RESEARCH (2014)
ADAR mediates differential expression of polycistronic microRNAs
Geetanjali Chawla et al.
NUCLEIC ACIDS RESEARCH (2014)
Identifying RNA editing sites using RNA sequencing data alone
Gokul Ramaswami et al.
NATURE METHODS (2013)
Genome-wide analysis of A-to-I RNA editing by single-molecule sequencing in Drosophila
Georges St Laurent et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2013)
RNA-interacting proteins act as site-specific repressors of ADAR2-mediated RNA editing and fluctuate upon neuronal stimulation
Aamira Tariq et al.
NUCLEIC ACIDS RESEARCH (2013)
Global regulation of alternative splicing by adenosine deaminase acting on RNA (ADAR)
Oz Solomon et al.
RNA (2013)
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
Daehwan Kim et al.
GENOME BIOLOGY (2013)
Accurate identification of A-to-I RNA editing in human by transcriptome sequencing
Jae Hoon Bahn et al.
GENOME RESEARCH (2012)
RNA editing in the human ENCODE RNA-seq data
Eddie Park et al.
GENOME RESEARCH (2012)
Adenosine deaminases that act on RNA induce reproducible changes in abundance and sequence of embryonic miRNAs
Cornelia Vesely et al.
GENOME RESEARCH (2012)
A-to-I editing of microRNAs in the mammalian brain increases during development
Ylva Ekdahl et al.
GENOME RESEARCH (2012)
Detecting differential usage of exons from RNA-seq data
Simon Anders et al.
GENOME RESEARCH (2012)
Nascent-Seq Indicates Widespread Cotranscriptional RNA Editing in Drosophila
Joseph Rodriguez et al.
MOLECULAR CELL (2012)
A closer look at RNA editing
Lior Pachter
NATURE BIOTECHNOLOGY (2012)
Comprehensive analysis of RNA-Seq data reveals extensive RNA editing in a human transcriptome
Zhiyu Peng et al.
NATURE BIOTECHNOLOGY (2012)
Accurate identification of human Alu and non-Alu RNA editing sites
Gokul Ramaswami et al.
NATURE METHODS (2012)
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
Cole Trapnell et al.
NATURE PROTOCOLS (2012)
R-chie: a web server and R package for visualizing RNA secondary structures
Daniel Lai et al.
NUCLEIC ACIDS RESEARCH (2012)
A distant cis acting intronic element induces site-selective RNA editing
Chammiran Daniel et al.
NUCLEIC ACIDS RESEARCH (2012)
Canonical A-to-I and C-to-U RNA Editing Is Enriched at 3′UTRs and microRNA Target Sites in Multiple Mouse Tissues
Tongjun Gu et al.
PLOS ONE (2012)
The intricate relationship between RNA structure, editing, and splicing
Leila E. Rieder et al.
SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY (2012)
High levels of RNA-editing site conservation amongst 15 laboratory mouse strains
Petr Daneck et al.
GENOME BIOLOGY (2012)
Genome-wide evaluation and discovery of vertebrate A-to-I RNA editing sites
S. Maas et al.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2011)
A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data
Heng Li
BIOINFORMATICS (2011)
Nascent-seq indicates widespread cotranscriptional pre-mRNA splicing in Drosophila
Yevgenia L. Khodor et al.
GENES & DEVELOPMENT (2011)
Engineered Alterations in RNA Editing Modulate Complex Behavior in Drosophila REGULATORY DIVERSITY OF ADENOSINE DEAMINASE ACTING ON RNA (ADAR) TARGETS
James E. C. Jepson et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2011)
The developmental transcriptome of Drosophila melanogaster
Brenton R. Graveley et al.
NATURE (2011)
The UCSC Genome Browser database: update 2011
Pauline A. Fujita et al.
NUCLEIC ACIDS RESEARCH (2011)
Computational Detection and Functional Analysis of Human Tissue-Specific A-to-I RNA Editing
Tao He et al.
PLOS ONE (2011)
Predicting sites of ADAR editing in double-stranded RNA
Julie M. Eggington et al.
NATURE COMMUNICATIONS (2011)
Functions and Regulation of RNA Editing by ADAR Deaminases
Kazuko Nishikura
ANNUAL REVIEW OF BIOCHEMISTRY, VOL 79 (2010)
SNVMix: predicting single nucleotide variants from next-generation sequencing of tumors
Rodrigo Goya et al.
BIOINFORMATICS (2010)
Cross-mapping and the identification of editing sites in mature microRNAs in high-throughput sequencing libraries
Michiel J. L. de Hoon et al.
GENOME RESEARCH (2010)
Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE
Sushmita Roy et al.
SCIENCE (2010)
TRANSAT-A Method for Detecting the Conserved Helices of Functional RNA Structures, Including Transient, Pseudo-Knotted and Alternative Structures
Nicholas J. P. Wiebe et al.
PLOS COMPUTATIONAL BIOLOGY (2010)
Large-scale mRNA sequencing determines global regulation of RNA editing during brain development
Helene Wahlstedt et al.
GENOME RESEARCH (2009)
Unlocking the secrets of the genome
Susan E. Celniker et al.
NATURE (2009)
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
Da Wei Huang et al.
NATURE PROTOCOLS (2009)
Genome-Wide Identification of Human RNA Editing Sites by Parallel DNA Capturing and Sequencing
Jin Billy Li et al.
SCIENCE (2009)
RNAalifold: improved consensus structure prediction for RNA alignments
Stephan H. Bernhart et al.
BMC BIOINFORMATICS (2008)
Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing
Qun Pan et al.
NATURE GENETICS (2008)
SimulFold:: Simultaneously inferring RNA structures including pseudoknots, alignments, and trees using a Bayesian MCMC framework
Irmtraud M. Meyer et al.
PLOS COMPUTATIONAL BIOLOGY (2007)
RNA editing level in the mouse is determined by the genomic repeat repertoire
Yossef Neeman et al.
RNA (2006)
Local RNA base pairing probabilities in large sequences
SH Bernhart et al.
BIOINFORMATICS (2006)
The RISC subunit Tudor-SN binds to hyper-edited double-stranded RNA and promotes its cleavage
ADJ Scadden
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2005)
Statistical evidence for conserved, local secondary structure in the coding regions of eukaryotic mRNAs and pre-mRNAs
IM Meyer et al.
NUCLEIC ACIDS RESEARCH (2005)
Evolutionarily conserved human targets of adenosine to inosine RNA editing
EY Levanon et al.
NUCLEIC ACIDS RESEARCH (2005)
Structure and sequence determinants required for the RNA editing of ADAR2 substrates
TR Dawson et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2004)
A survey of RNA editing in human brain
M Blow et al.
GENOME RESEARCH (2004)
Widespread A-to-I RNA editing of alu-containing mRNAs in the human transcriptome
A Athanasiadis et al.
PLOS BIOLOGY (2004)
Nervous system targets of RNA editing identified by comparative genomics
B Hoopengardner et al.
SCIENCE (2003)
Pfold: RNA secondary structure prediction using stochastic context-free grammars
B Knudsen et al.
NUCLEIC ACIDS RESEARCH (2003)
RNA hairpins in noncoding regions of human brain and Caenorhabditis elegans mRNA are edited by adenosine deaminases that act on RNA
DP Morse et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)
Fast algorithms for large-scale genome alignment and comparison
AL Delcher et al.
NUCLEIC ACIDS RESEARCH (2002)
Alternative splicing: increasing diversity in the proteomic world
BR Graveley
TRENDS IN GENETICS (2001)
A-to-I pre-mRNA editing in Drosophila is primarily involved in adult nervous system function and integrity
MJ Palladino et al.
CELL (2000)