Related references
Note: Only part of the references are listed.Gene expression profiling of human breast tissue samples using SAGE-Seq
Zhenhua Jeremy Wu et al.
GENOME RESEARCH (2010)
CD8 T cell response and evolutionary pressure to HIV-1 cryptic epitopes derived from antisense transcription
Anju Bansal et al.
JOURNAL OF EXPERIMENTAL MEDICINE (2010)
Gene Expression Profiles of HIV-1-Infected Glia and Brain: Toward Better Understanding of the Role of Astrocytes in HIV-1-Associated Neurocognitive Disorders
Alejandra Borjabad et al.
JOURNAL OF NEUROIMMUNE PHARMACOLOGY (2010)
Comprehensive comparative analysis of strand-specific RNA sequencing methods
Joshua Z. Levin et al.
NATURE METHODS (2010)
Error correction of next-generation sequencing data and reliable estimation of HIV quasispecies
Osvaldo Zagordi et al.
NUCLEIC ACIDS RESEARCH (2010)
HIV Drug Resistance Surveillance Using Pooled Pyrosequencing
Hezhao Ji et al.
PLOS ONE (2010)
High-Throughput SuperSAGE for Digital Gene Expression Analysis of Multiple Samples Using Next Generation Sequencing
Hideo Matsumura et al.
PLOS ONE (2010)
Genome-Wide mRNA Expression Correlates of Viral Control in CD4+T-Cells from HIV-1-Infected Individuals
Margalida Rotger et al.
PLOS PATHOGENS (2010)
Detection of low-frequency pretherapy chemokine (CXC motif) receptor 4 (CXCR4)-using HIV-1 with ultra-deep pyrosequencing
John Archer et al.
AIDS (2009)
HIV-1-infected dendritic cells show 2 phases of gene expression changes, with lysosomal enzyme activity decreased during the second phase
Andrew N. Harman et al.
BLOOD (2009)
Next-generation tag sequencing for cancer gene expression profiling
A. Sorana Morrissy et al.
GENOME RESEARCH (2009)
Circulating Monocytes in HIV-1-Infected Viremic Subjects Exhibit an Antiapoptosis Gene Signature and Virus- and Host-Mediated Apoptosis Resistance
Malavika S. Giri et al.
JOURNAL OF IMMUNOLOGY (2009)
Microarray Analysis of Lymphatic Tissue Reveals Stage-Specific, Gene Expression Signatures in HIV-1 Infection
Qingsheng Li et al.
JOURNAL OF IMMUNOLOGY (2009)
Low-Abundance Drug-Resistant Viral Variants in Chronically HIV-Infected, Antiretroviral Treatment-Naive Patients Significantly Impact Treatment Outcomes
Birgitte B. Simen et al.
JOURNAL OF INFECTIOUS DISEASES (2009)
Pyrosequencing of small non-coding RNAs in HIV-1 infected cells: evidence for the processing of a viral-cellular double-stranded RNA hybrid
Man Lung Yeung et al.
NUCLEIC ACIDS RESEARCH (2009)
Quantitative Deep Sequencing Reveals Dynamic HIV-1 Escape and Large Population Shifts during CCR5 Antagonist Therapy In Vivo
Athe M. N. Tsibris et al.
PLOS ONE (2009)
Microarray study reveals that HIV-1 induces rapid type-1 interferon-dependent p53 mRNA up-regulation in human primary CD4+ T cells
Michael Imbeault et al.
RETROVIROLOGY (2009)
Massively parallel pyrosequencing highlights minority variants in the HIV-1 env quasispecies deriving from lymphomonocyte sub-populations
Gabriella Rozera et al.
RETROVIROLOGY (2009)
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
Ben Langmead et al.
GENOME BIOLOGY (2009)
Massively parallel pyrosequencing in HIV research
Frederic D. Bushman et al.
AIDS (2008)
R5 and x4 HIV viruses differentially modulate host gene expression in resting CD4+ T cells
Melissa Sirois et al.
AIDS RESEARCH AND HUMAN RETROVIRUSES (2008)
CD4+ T-Cell Decline after the Interruption of Antiretroviral Therapy in ACTG A5170 Is Predicted by Differential Expression of Genes in the Ras Signaling Pathway
Maryanne T. Vahey et al.
AIDS RESEARCH AND HUMAN RETROVIRUSES (2008)
SuperSAGE: A Modern Platform for Genome-Wide Quantitative Transcript Profiling
Hideo Matsumura et al.
CURRENT PHARMACEUTICAL BIOTECHNOLOGY (2008)
The beginning of the end for microarrays?
Jay Shendure
NATURE METHODS (2008)
Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms
Peter A. C. 't Hoen et al.
NUCLEIC ACIDS RESEARCH (2008)
Cellular Gene Expression Profiles in Rhesus Macaques Challenged Mucosally with a Pathogenic R5 Tropic Simian Human Immunodeficiency Virus Isolate
Hye-Kyung Chung et al.
VIRAL IMMUNOLOGY (2008)
Viral population estimation using pyrosequencing
Nicholas Eriksson et al.
PLOS COMPUTATIONAL BIOLOGY (2008)
T cell responses to human endogenous retroviruses in HIV-1 infection
Keith E. Garrison et al.
PLOS PATHOGENS (2007)
Detection, characterization and regulation of antisense transcripts in HIV-I
Sebastien Landry et al.
RETROVIROLOGY (2007)
HIV integration site selection: Analysis by massively parallel pyrosequencing reveals association with epigenetic modifications
Gary P. Wang et al.
GENOME RESEARCH (2007)
Differential gene expression in CD8+ cells from HIV-1-infected subjects showing suppression of HIV replication
Beatriz Martinez-Marino et al.
VIROLOGY (2007)
NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins
Kim D. Pruitt et al.
NUCLEIC ACIDS RESEARCH (2007)
DNA bar coding and pyrosequencing to identify rare HIV drug resistance mutations
Christian Hoffmann et al.
NUCLEIC ACIDS RESEARCH (2007)
Distinct transcriptional profiles in ex vivo CD4(+) and CD8(+) T cells are established early in human immunodeficiency virus type 1 infection and are characterized by a chronic interferon response as well as extensive transcriptional changes in CD8(+) T cells
Martin D. Hyrcza et al.
JOURNAL OF VIROLOGY (2007)
Human Immunodeficiency Virus-Type 1 LTR DNA contains an intrinsic gene producing antisense RNA and protein products
Linda B. Ludwig et al.
RETROVIROLOGY (2006)
Microarray data on gene modulation by HIV-1 in immune cells: 2000-2006
Malavika S. Giri et al.
JOURNAL OF LEUKOCYTE BIOLOGY (2006)
Altered gene expression in asymptomatic SHIV-infected rhesus macaques (Macacca mulatta)
Erica E. Carroll et al.
VIROLOGY JOURNAL (2006)
Gene expression profiling of the host response to HIV-1B, C, or A/E infection in monocyte-derived dendritic cells
Mayra Solis et al.
VIROLOGY (2006)
Gene expression profiling of gut mucosa and mesenteric lymph nodes in simian immunodeficiency virus-infected macaques with divergent disease course
M. D. George et al.
JOURNAL OF MEDICAL PRIMATOLOGY (2006)
Gene-expression profiling of HIV-1 infection and perinatal transmission in Botswana
M. Montano et al.
GENES AND IMMUNITY (2006)
BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis
S Durinck et al.
BIOINFORMATICS (2005)
RNA degradation by the exosome is promoted by a nuclear polyade nylation complex
J LaCava et al.
CELL (2005)
Repbase update, a database of eukaryotic repetitive elements
J Jurka et al.
CYTOGENETIC AND GENOME RESEARCH (2005)
Novel single-cell-level phenotypic assay for residual drug susceptibility and reduced replication capacity of drug-resistant human immunodeficiency virus type 1
HL Zhang et al.
JOURNAL OF VIROLOGY (2004)
Bioconductor: open software development for computational biology and bioinformatics
RC Gentleman et al.
GENOME BIOLOGY (2004)
Global analysis of cellular transcription following infection with an HIV-based vector
R Mitchell et al.
MOLECULAR THERAPY (2003)
Share Paper
