4.6 Article

Simultaneous reconstruction of evolutionary history and epidemiological dynamics from viral sequences with the birth-death SIR model

Related references

Note: Only part of the references are listed.
Article Biochemical Research Methods

Recursive algorithms for phylogenetic tree counting

Alexandra Gavryushkina et al.

ALGORITHMS FOR MOLECULAR BIOLOGY (2013)

Article Biology

Coalescent inference for infectious disease: meta-analysis of hepatitis C

Bethany Dearlove et al.

PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2013)

Article Multidisciplinary Sciences

Birth-death skyline plot reveals temporal changes of epidemic spread in HIV and hepatitis C virus (HCV)

Tanja Stadler et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Article Genetics & Heredity

Complex Population Dynamics and the Coalescent Under Neutrality

Erik M. Volz

GENETICS (2012)

Article Biochemistry & Molecular Biology

Estimating the Basic Reproductive Number from Viral Sequence Data

Tanja Stadler et al.

MOLECULAR BIOLOGY AND EVOLUTION (2012)

Article Biochemical Research Methods

Simple Epidemiological Dynamics Explain Phylogenetic Clustering of HIV from Patients with Recent Infection

Erik M. Volz et al.

PLOS COMPUTATIONAL BIOLOGY (2012)

Review Infectious Diseases

Phylogenetic and epidemic modeling of rapidly evolving infectious diseases

Denise Kuehnert et al.

INFECTION GENETICS AND EVOLUTION (2011)

Article Multidisciplinary Sciences

Phylodynamics of Hepatitis C Virus Subtype 2c in the Province of Cordoba, Argentina

Viviana E. Re et al.

PLOS ONE (2011)

Article Biochemical Research Methods

Inference for Nonlinear Epidemiological Models Using Genealogies and Time Series

David A. Rasmussen et al.

PLOS COMPUTATIONAL BIOLOGY (2011)

Editorial Material Public, Environmental & Occupational Health

Cohort Profile: The Swiss HIV Cohort Study

Franziska Schoeni-Affolter et al.

INTERNATIONAL JOURNAL OF EPIDEMIOLOGY (2010)

Article Biology

Sampling-through-time in birth-death trees

Tanja Stadler

JOURNAL OF THEORETICAL BIOLOGY (2010)

Article Biology

Viral phylodynamics and the search for an 'effective number of infections'

Simon D. W. Frost et al.

PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2010)

Article Statistics & Probability

THE PSEUDO-MARGINAL APPROACH FOR EFFICIENT MONTE CARLO COMPUTATIONS

Christophe Andrieu et al.

ANNALS OF STATISTICS (2009)

Article Multidisciplinary Sciences

Genetic analysis reveals the complex structure of HIV-1 transmission within defined risk groups

S Húe et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Review Multidisciplinary Sciences

Unifying the epidemiological and evolutionary dynamics of pathogens

BT Grenfell et al.

SCIENCE (2004)

Article Multidisciplinary Sciences

The epidemic behavior of the hepatitis C virus

OG Pybus et al.

SCIENCE (2001)

Article Genetics & Heredity

A new statistical method for haplotype reconstruction from population data

M Stephens et al.

AMERICAN JOURNAL OF HUMAN GENETICS (2001)