4.4 Article

The random-model method enables ab initio 3D reconstruction of asymmetric particles and determination of particle symmetry

Journal

JOURNAL OF STRUCTURAL BIOLOGY
Volume 171, Issue 2, Pages 216-222

Publisher

ACADEMIC PRESS INC ELSEVIER SCIENCE
DOI: 10.1016/j.jsb.2010.03.017

Keywords

Asymmetric reconstruction; Cryo-electron microscopy; Starting model; Model validation; Single-particle reconstruction; Symmetry determination

Funding

  1. National Institute of Allergy and Infectious Diseases [R21A1081221]
  2. BYU

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Model-based, 3D reconstruction techniques depend on reliable starting models. We present an extension of the random-model method (RMM) that allows the ab initio generation of suitable starting models directly from un-averaged, experimental images of asymmetric or symmetric particles. Therefore, the asymmetric RMM can also be used to determine point-group symmetry. The procedure is facilitated by the use of (a) variable angular step-sizes during iterative origin and orientation searches, (b) high numbers of particle images, and (c) highly defocused images. The method is inhibited by mixed-handedness orientation assignments and by particles with inconspicuous features. For symmetric particles, symmetric RMMs can overcome these deficiencies. (C) 2010 Elsevier Inc. All rights reserved.

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