4.8 Article

PPIM: A Protein-Protein Interaction Database for Maize

Journal

PLANT PHYSIOLOGY
Volume 170, Issue 2, Pages 618-626

Publisher

OXFORD UNIV PRESS INC
DOI: 10.1104/pp.15.01821

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Funding

  1. National Key Laboratory of Plant Molecular Genetics
  2. National Natural Science Foundation of China [91130032, 91530321, 61572363, 61134013, 91439103, 91529303]
  3. Strategic Priority Research Program of the Chinese Academy of Sciences [XDB13040700]
  4. Innovation Program of the Shanghai Municipal Education Commission [13ZZ072]
  5. Shanghai Pujiang Program [13PJD032]

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Maize (Zea mays) is one of the most important crops worldwide. To understand the biological processes underlying various traits of the crop (e.g. yield and response to stress), a detailed protein-protein interaction (PPI) network is highly demanded. Unfortunately, there are very few such PPIs available in the literature. Therefore, in this work, we present the Protein-Protein Interaction Database for Maize (PPIM), which covers 2,762,560 interactions among 14,000 proteins. The PPIM contains not only accurately predicted PPIs but also those molecular interactions collected from the literature. The database is freely available at http://comp-sysbio.org/ppim with a user-friendly powerful interface. We believe that the PPIM resource can help biologists better understand the maize crop.

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