4.6 Article

Electronic Structure and Spectroscopy of Nucleic Acid Bases: Ionization Energies, Ionization-Induced Structural Changes, and Photoelectron Spectra

Journal

JOURNAL OF PHYSICAL CHEMISTRY A
Volume 114, Issue 46, Pages 12305-12317

Publisher

AMER CHEMICAL SOC
DOI: 10.1021/jp1063726

Keywords

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Funding

  1. National Science Foundation through the CRIF:CRF [CHE-0625419, 0624602, 0625237, CHE-0951634]
  2. Office of Energy Research, Office of Basic Energy Sciences, Chemical Sciences Division of the U.S. Department of Energy [DE-AC02-05CH11231]
  3. Direct For Mathematical & Physical Scien
  4. Division Of Chemistry [0624602, 0625237] Funding Source: National Science Foundation

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We report high-level ab initio calculations and single-photon ionization mass spectrometry study of ionization of adenine (A), thymine (T), cytosine (C), and guanine (G). For thymine and adenine, only the lowest-energy tautomers were considered, whereas for cytosine and guanine we characterized the five lowest-energy tautomeric forms. The first adiabatic and several vertical ionization energies were computed using the equation-of-motion coupled-cluster method for ionization potentials with single and double substitutions. Equilibrium structures of the cationic ground states were characterized by DFT with the omega B97X-D functional. The ionization-induced geometry changes of the bases are consistent with the shapes of the corresponding molecular orbitals. For the lowest-energy tautomers, the magnitude of the structural relaxation decreases in the following series, G > C > A > T, the respective relaxation energies being 0.41, 0.32, 0.25, and 0.20 eV. The computed adiabatic ionization energies (8.13, 8.89, 8.51-8.67, and 7.75-7.87 eV for A, T, C, and G, respectively) agree well with the onsets of the photoionization efficiency (PIE) curves (8.20 +/- 0.05, 8.95 +/- 0.05, 8.60 +/- 0.05, and 7.75 +/- 0.05 eV). Vibrational progressions for the S-0-D-0 vibronic bands computed within double-harmonic approximation with Duschinsky rotations are compared with previously reported experimental photoelectron spectra and differentiated PIE curves.

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