4.4 Article

Effects of imperfect dynamic clamp: Computational and experimental results

Journal

JOURNAL OF NEUROSCIENCE METHODS
Volume 169, Issue 2, Pages 282-289

Publisher

ELSEVIER SCIENCE BV
DOI: 10.1016/j.jneumeth.2007.10.009

Keywords

dynamic clamp; computational neuroscience

Funding

  1. NCRR NIH HHS [R01 RR020115-02, R01 RR020115-04, R01 RR020115, R01 RR020115-03, R01 RR020115-01] Funding Source: Medline
  2. NIMH NIH HHS [R01 MH061604-05, R01 MH061604-01A1, R01 MH061604-04, R01 MH061604-03, R01 MH061604, R01 MH061604-02] Funding Source: Medline
  3. NINDS NIH HHS [R01 NS034425-08, R01 NS034425-07, R01 NS034425, R01 NS034425-09, R01 NS034425-06] Funding Source: Medline

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In the dynamic clamp technique, a typically nonlinear feedback system delivers electrical current to an excitable cell that represents the actions of virtual ion channels (e.g., channels that are gated by local membrane potential or by electrical activity in neighboring biological or virtual neurons). Since the conception of this technique, there have been a number of different implementations of dynamic clamp systems, each with differing levels of flexibility and performance. Embedded hardware-based systems typically offer feedback that is very fast and precisely timed, but these systems are often expensive and sometimes inflexible. PC-based systems, on the other hand, allow the user to write software that defines an arbitrarily complex feedback system, but real-time performance in PC-based systems can be deteriorated by imperfect real-time performance. Here, we systematically evaluate the performance requirements for artificial dynamic clamp knock-in of transient sodium and delayed rectifier potassium conductances. Specifically, we examine the effects of controller time step duration, differential equation integration method, jitter (variability in time step), and latency (the time lag from reading inputs to updating outputs). Each of these control system flaws is artificially introduced in both simulated and real dynamic clamp experiments. We demonstrate that each of these errors affect dynamic clamp accuracy in a way that depends on the time constants and stiffness of the differential equations being solved. In simulations, time steps above 0.2 ms lead to catastrophic alteration of spike shape, but the frequency-current relationship is much more robust. Latency (the part of the time step that occurs between measuring membrane potential and injecting re-calculated membrane current) is a crucial factor as well. Experimental data are substantially more sensitive to inaccuracies than simulated data. (c) 2007 Elsevier B.V. All rights reserved.

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