4.3 Review

Towards an understanding of cell-specific functions of signal-dependent transcription factors

Related references

Note: Only part of the references are listed.
Review Immunology

Interleukin-4-and Interleukin-13-Mediated Alternatively Activated Macrophages: Roles in Homeostasis and Disease

Steven J. Van Dyken et al.

ANNUAL REVIEW OF IMMUNOLOGY, VOL 31 (2013)

Article Biochemistry & Molecular Biology

Latent Enhancers Activated by Stimulation in Differentiated Cells

Renato Ostuni et al.

Article Biochemistry & Molecular Biology

Cooperativity and Rapid Evolution of Cobound Transcription Factors in Closely Related Mammals

Klara Stefflova et al.

Article Cell Biology

Historical overview of studies on inflammation in Russia

Liudmila Buryachkovskaya et al.

INFLAMMATION RESEARCH (2013)

Article Biochemistry & Molecular Biology

Analysis of inflammatory and lipid metabolic networks across RAW264.7 and thioglycolate-elicited macrophages

Mano R. Maurya et al.

JOURNAL OF LIPID RESEARCH (2013)

Article Biochemistry & Molecular Biology

eRNAs Are Required for p53-Dependent Enhancer Activity and Gene Transcription

Carlos A. Melo et al.

MOLECULAR CELL (2013)

Article Biochemistry & Molecular Biology

Remodeling of the Enhancer Landscape during Macrophage Activation Is Coupled to Enhancer Transcription

Minna U. Kaikkonen et al.

MOLECULAR CELL (2013)

Article Multidisciplinary Sciences

Rev-Erbs repress macrophage gene expression by inhibiting enhancer-directed transcription

Michael T. Y. Lam et al.

NATURE (2013)

Review Multidisciplinary Sciences

Macrophage biology in development, homeostasis and disease

Thomas A. Wynn et al.

NATURE (2013)

Article Immunology

Origin of monocytes and macrophages in a committed progenitor

Jan Hettinger et al.

NATURE IMMUNOLOGY (2013)

Article Multidisciplinary Sciences

Direct Proteomic Quantification of the Secretome of Activated Immune Cells

Felix Meissner et al.

SCIENCE (2013)

Article Multidisciplinary Sciences

Positive Feedback Between PU.1 and the Cell Cycle Controls Myeloid Differentiation

Hao Yuan Kueh et al.

SCIENCE (2013)

Article Biochemistry & Molecular Biology

Foxp3 Exploits a Pre-Existent Enhancer Landscape for Regulatory T Cell Lineage Specification

Robert M. Samstein et al.

Article Biochemistry & Molecular Biology

A Validated Regulatory Network for Th17 Cell Specification

Maria Ciofani et al.

Article Biochemistry & Molecular Biology

STATs Shape the Active Enhancer Landscape of T Cell Populations

Golnaz Vahedi et al.

Article Medicine, Research & Experimental

Macrophage plasticity and polarization: in vivo veritas

Antonio Sica et al.

JOURNAL OF CLINICAL INVESTIGATION (2012)

Article Biochemistry & Molecular Biology

Intragenic Enhancers Act as Alternative Promoters

Monika S. Kowalczyk et al.

MOLECULAR CELL (2012)

Article Biochemistry & Molecular Biology

Control of Proinflammatory Gene Programs by Regulated Trimethylation and Demethylation of Histone H4K20

Joshua D. Stender et al.

MOLECULAR CELL (2012)

Article Multidisciplinary Sciences

Regulation of circadian behaviour and metabolism by REV-ERB-α and REV-ERB-β

Han Cho et al.

NATURE (2012)

Article Multidisciplinary Sciences

Enhancer decommissioning by LSD1 during embryonic stem cell differentiation

Warren A. Whyte et al.

NATURE (2012)

Article Multidisciplinary Sciences

An integrated encyclopedia of DNA elements in the human genome

Ian Dunham et al.

NATURE (2012)

Article Multidisciplinary Sciences

Requirement for the histone deacetylase Hdac3 for the inflammatory gene expression program in macrophages

Xuefen Chen et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Biochemistry & Molecular Biology

Master Transcription Factors Determine Cell-Type-Specific Responses to TGF-β Signaling

Alan C. Mullen et al.

Article Biochemistry & Molecular Biology

AP-2γ regulates oestrogen receptor-mediated long-range chromatin interaction and gene transcription

Si Kee Tan et al.

EMBO JOURNAL (2011)

Article Biochemistry & Molecular Biology

Drosophila Set1 is the major histone H3 lysine 4 trimethyltransferase with role in transcription

M. Behfar Ardehali et al.

EMBO JOURNAL (2011)

Review Cell Biology

Pioneer transcription factors: establishing competence for gene expression

Kenneth S. Zaret et al.

GENES & DEVELOPMENT (2011)

Article Biochemistry & Molecular Biology

Regulation of nucleosome landscape and transcription factor targeting at tissue-specific enhancers by BRG1

Gangqing Hu et al.

GENOME RESEARCH (2011)

Article Biochemistry & Molecular Biology

Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity

Lingyun Song et al.

GENOME RESEARCH (2011)

Article Biochemistry & Molecular Biology

Epigenetic signatures distinguish multiple classes of enhancers with distinct cellular functions

Gabriel E. Zentner et al.

GENOME RESEARCH (2011)

Article Biochemistry & Molecular Biology

Serum Response Factor Utilizes Distinct Promoter- and Enhancer-Based Mechanisms To Regulate Cytoskeletal Gene Expression in Macrophages

Amy L. Sullivan et al.

MOLECULAR AND CELLULAR BIOLOGY (2011)

Article Biochemistry & Molecular Biology

Transcription Factor AP1 Potentiates Chromatin Accessibility and Glucocorticoid Receptor Binding

Simon C. Biddie et al.

MOLECULAR CELL (2011)

Article Endocrinology & Metabolism

GATA4 Regulates Estrogen Receptor-α-Mediated Osteoblast Transcription

Gustavo A. Miranda-Carboni et al.

MOLECULAR ENDOCRINOLOGY (2011)

Article Multidisciplinary Sciences

A unique chromatin signature uncovers early developmental enhancers in humans

Alvaro Rada-Iglesias et al.

NATURE (2011)

Article Genetics & Heredity

FOXA1 is a key determinant of estrogen receptor function and endocrine response

Antoni Hurtado et al.

NATURE GENETICS (2011)

Article Biochemistry & Molecular Biology

Recognition of enhancer element-specific histone methylation by TIP60 in transcriptional activation

Kwang Won Jeong et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2011)

Article Genetics & Heredity

Mechanisms Establishing TLR4-Responsive Activation States of Inflammatory Response Genes

Laure Escoubet-Lozach et al.

PLOS GENETICS (2011)

Review Immunology

Monocyte recruitment during infection and inflammation

Chao Shi et al.

NATURE REVIEWS IMMUNOLOGY (2011)

Review Immunology

Microglial cell origin and phenotypes in health and disease

Kaoru Saijo et al.

NATURE REVIEWS IMMUNOLOGY (2011)

Review Immunology

Protective and pathogenic functions of macrophage subsets

Peter J. Murray et al.

NATURE REVIEWS IMMUNOLOGY (2011)

Review Immunology

Transcriptional regulation of macrophage polarization: enabling diversity with identity

Toby Lawrence et al.

NATURE REVIEWS IMMUNOLOGY (2011)

Article Immunology

Highlights of 10 years of immunology in Nature Reviews Immunology

Ruslan Medzhitov et al.

NATURE REVIEWS IMMUNOLOGY (2011)

Review Physiology

Macrophages, Inflammation, and Insulin Resistance

Jerrold M. Olefsky et al.

ANNUAL REVIEW OF PHYSIOLOGY (2010)

Review Biochemistry & Molecular Biology

Selective Transcription in Response to an Inflammatory Stimulus

Stephen T. Smale

Article Biochemistry & Molecular Biology

Long Noncoding RNAs with Enhancer-like Function in Human Cells

Ulf Andersson Orom et al.

Article Biochemistry & Molecular Biology

FoxO1 regulates Tlr4 inflammatory pathway signalling in macrophages

WuQiang Fan et al.

EMBO JOURNAL (2010)

Article Cell Biology

Bcl-6 and NF-κB cistromes mediate opposing regulation of the innate immune response

Grant D. Barish et al.

GENES & DEVELOPMENT (2010)

Review Biochemistry & Molecular Biology

The role of Toll-like receptors in chronic inflammation

Stefan K. Drexler et al.

INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY (2010)

Article Multidisciplinary Sciences

Widespread transcription at neuronal activity-regulated enhancers

Tae-Kyung Kim et al.

NATURE (2010)

Article Genetics & Heredity

Nucleosome dynamics define transcriptional enhancers

Housheng Hansen He et al.

NATURE GENETICS (2010)

Article Multidisciplinary Sciences

Histone H3K27ac separates active from poised enhancers and predicts developmental state

Menno P. Creyghton et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Multidisciplinary Sciences

Variation in Transcription Factor Binding Among Humans

Maya Kasowski et al.

SCIENCE (2010)

Article Biochemistry & Molecular Biology

A Large Fraction of Extragenic RNA Pol II Transcription Sites Overlap Enhancers

Francesca De Santa et al.

PLOS BIOLOGY (2010)

Review Immunology

Nuclear receptor transrepression pathways that regulate inflammation in macrophages and T cells

Christopher K. Glass et al.

NATURE REVIEWS IMMUNOLOGY (2010)

Article Biochemistry & Molecular Biology

Control of Inducible Gene Expression by Signal-Dependent Transcriptional Elongation

Diana C. Hargreaves et al.

Article Biochemistry & Molecular Biology

A Unifying Model for the Selective Regulation of Inducible Transcription by CpG Islands and Nucleosome Remodeling

Vladimir R. Ramirez-Carrozzi et al.

Article Multidisciplinary Sciences

Histone modifications at human enhancers reflect global cell-type-specific gene expression

Nathaniel D. Heintzman et al.

NATURE (2009)

Review Immunology

Transcriptional control of the inflammatory response

Ruslan Medzhitov et al.

NATURE REVIEWS IMMUNOLOGY (2009)

Article Biochemistry & Molecular Biology

FoxA1 translates epigenetic signatures into enhancer-driven lineage-specific transcription

Mathieu Lupien et al.

Article Biochemistry & Molecular Biology

Molecular Regulation of H3K4 Trimethylation by Wdr82, a Component of Human Set1/COMPASS

Min Wu et al.

MOLECULAR AND CELLULAR BIOLOGY (2008)

Article Multidisciplinary Sciences

Induced ncRNAs allosterically modify RNA-binding proteins in cis to inhibit transcription

Xiangting Wang et al.

NATURE (2008)

Article Multidisciplinary Sciences

Genome-wide maps of chromatin state in pluripotent and lineage-committed cells

Tarjei S. Mikkelsen et al.

NATURE (2007)

Article Biochemistry & Molecular Biology

Transcriptional noise and the fidelity of initiation by RNA polymerase II

Kevin Struhl

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2007)

Article Multidisciplinary Sciences

In vivo enhancer analysis of human conserved non-coding sequences

Len A. Pennacchio et al.

NATURE (2006)

Review Biochemistry & Molecular Biology

The Foxa family of transcription factors in development and metabolism

J. R. Friedman et al.

CELLULAR AND MOLECULAR LIFE SCIENCES (2006)

Article Multidisciplinary Sciences

A nuclear receptor corepressor transcriptional checkpoint controlling activator protein 1-dependent gene networks required for macrophage activation

S Ogawa et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)

Article Multidisciplinary Sciences

Human macrophage activation programs induced by bacterial pathogens

GJ Nau et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)

Article Multidisciplinary Sciences

A trithorax-group complex purified from Saccharomyces cerevisiae is required for methylation of histone H3

PL Nagy et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)