4.7 Review

Multidimensional approaches for studying plant defence against insects: from ecology to omics and synthetic biology

Related references

Note: Only part of the references are listed.
Article Plant Sciences

Plant metabolomics. Methods and protocols

Alexandre Foito

ANNALS OF BOTANY (2014)

Review Entomology

Response of Native Insect Communities to Invasive Plants

T. Martijn Bezemer et al.

ANNUAL REVIEW OF ENTOMOLOGY, VOL 59, 2014 (2014)

Review Plant Sciences

Plant Interactions with Multiple Insect Herbivores: From Community to Genes

Jeltje M. Stam et al.

ANNUAL REVIEW OF PLANT BIOLOGY, VOL 65 (2014)

Review Plant Sciences

TraitCapture: genomic and environment modelling of plant phenomic data

Tim B. Brown et al.

CURRENT OPINION IN PLANT BIOLOGY (2014)

Editorial Material Plant Sciences

Editorial overview: Growing the future: synthetic biology in plants

Sarah E. O'Connor et al.

CURRENT OPINION IN PLANT BIOLOGY (2014)

Article Biochemistry & Molecular Biology

Comparative analyses of salivary proteins from three aphid species

S. Vandermoten et al.

INSECT MOLECULAR BIOLOGY (2014)

Editorial Material Plant Sciences

Advancing plant ecology through meta-analyses

Lorena Gomez-Aparicio et al.

JOURNAL OF ECOLOGY (2014)

Review Plant Sciences

Insect herbivore- associated organisms affect plant responses to herbivory

Feng Zhu et al.

NEW PHYTOLOGIST (2014)

Review Biochemistry & Molecular Biology

Mass spectrometry in plant metabolomics strategies: from analytical platforms to data acquisition and processing

Madeleine Ernst et al.

NATURAL PRODUCT REPORTS (2014)

Editorial Material Multidisciplinary Sciences

Engineering explored

Pamela A. Silver et al.

NATURE (2014)

News Item Multidisciplinary Sciences

STATISTICAL ERRORS

Regina Nuzzo

NATURE (2014)

Editorial Material Biotechnology & Applied Microbiology

The devil in the details of RNA-seq

Anton Kratz et al.

NATURE BIOTECHNOLOGY (2014)

Article Biochemistry & Molecular Biology

Gramene 2013: comparative plant genomics resources

Marcela K. Monaco et al.

NUCLEIC ACIDS RESEARCH (2014)

Review Plant Sciences

Direct and indirect chemical defences against insects in a multitrophic framework

Rieta Gols

PLANT CELL AND ENVIRONMENT (2014)

Review Plant Sciences

Ecology of plant volatiles: taking a plant community perspective

Ronald Pierik et al.

PLANT CELL AND ENVIRONMENT (2014)

Editorial Material Plant Sciences

Emerging tools for synthetic biology in plants

Ian Small et al.

PLANT JOURNAL (2014)

Article Multidisciplinary Sciences

Field-evolved resistance by western corn rootworm to multiple Bacillus thuringiensis toxins in transgenic maize

Aaron J. Gassmann et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)

Article Mathematical & Computational Biology

DBM-DB: the diamondback moth genome database

Weiqi Tang et al.

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION (2014)

Article Biochemistry & Molecular Biology

Lab to Farm: Applying Research on Plant Genetics and Genomics to Crop Improvement

Pamela C. Ronald

PLOS BIOLOGY (2014)

Review Biochemistry & Molecular Biology

Plant secretomics Identification, isolation, and biological significance under environmental stress

Tehreem Tanveer et al.

PLANT SIGNALING & BEHAVIOR (2014)

Article Chemistry, Analytical

Next-Generation Sequencing Platforms

Elaine R. Mardis

ANNUAL REVIEW OF ANALYTICAL CHEMISTRY, VOL 6 (2013)

Review Entomology

An Emerging Understanding of Mechanisms Governing Insect Herbivory Under Elevated CO2

Jorge A. Zavala et al.

ANNUAL REVIEW OF ENTOMOLOGY, VOL 58 (2013)

Review Plant Sciences

Engineering Plant Disease Resistance Based on TAL Effectors

Sebastian Schornack et al.

ANNUAL REVIEW OF PHYTOPATHOLOGY, VOL 51 (2013)

Review Plant Sciences

Future Scenarios for Plant Phenotyping

Fabio Fiorani et al.

ANNUAL REVIEW OF PLANT BIOLOGY, VOL 64 (2013)

Article Biochemistry & Molecular Biology

Plant secretome - From cellular process to biological activity

Cornelia Krause et al.

BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS (2013)

Article Biotechnology & Applied Microbiology

KONAGAbase: a genomic and transcriptomic database for the diamondback moth, Plutella xylostella

Akiya Jouraku et al.

BMC GENOMICS (2013)

Article Biotechnology & Applied Microbiology

Comparative transcriptome analysis of Gossypium hirsutum L. in response to sap sucking insects: aphid and whitefly

Neeraj Kumar Dubey et al.

BMC GENOMICS (2013)

Letter Cell Biology

Efficient genome editing in plants using a CRISPR/Cas system

Zhengyan Feng et al.

CELL RESEARCH (2013)

Review Biochemical Research Methods

Learning from nature: new approaches to the metabolic engineering of plant defense pathways

Jan Jirschitzka et al.

CURRENT OPINION IN BIOTECHNOLOGY (2013)

Article Biochemistry & Molecular Biology

Proteome Analysis of Rice (Oryza sativa L.) Mutants Reveals Differentially Induced Proteins during Brown Planthopper (Nilaparvata lugens) Infestation

Jatinder Singh Sangha et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2013)

Review Biochemistry & Molecular Biology

Microbial Brokers of Insect-Plant Interactions Revisited

Angela E. Douglas

JOURNAL OF CHEMICAL ECOLOGY (2013)

Review Biochemical Research Methods

Proteomics of model and crop plant species: Status, current limitations and strategic advances for crop improvement

Herve Vanderschuren et al.

JOURNAL OF PROTEOMICS (2013)

Review Plant Sciences

Biosynthesis, function and metabolic engineering of plant volatile organic compounds

Natalia Dudareva et al.

NEW PHYTOLOGIST (2013)

Article Biochemistry & Molecular Biology

An ecogenomic analysis of herbivore-induced plant volatiles in Brassica juncea

Vartika Mathur et al.

MOLECULAR ECOLOGY (2013)

News Item Multidisciplinary Sciences

A HARD LOOK AT GM CROPS

Natasha Gilbert

NATURE (2013)

Editorial Material Plant Sciences

Evolution of mixed strategies of plant defense against herbivores

Nash E. Turley et al.

NEW PHYTOLOGIST (2013)

Article Plant Sciences

GoldenBraid 2.0: A Comprehensive DNA Assembly Framework for Plant Synthetic Biology

Alejandro Sarrion-Perdigones et al.

PLANT PHYSIOLOGY (2013)

Article Plant Sciences

Transcriptome Responses to Combinations of Stresses in Arabidopsis

Simon Rasmussen et al.

PLANT PHYSIOLOGY (2013)

Article Mathematical & Computational Biology

BmTEdb: a collective database of transposable elements in the silkworm genome

Hong-En Xu et al.

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION (2013)

Article Biotechnology & Applied Microbiology

Gene regulatory networks in plants: learning causality from time and perturbation

Gabriel Krouk et al.

GENOME BIOLOGY (2013)

Article Agriculture, Multidisciplinary

Bt cotton and sustainability of pesticide reductions in India

Vijesh V. Krishna et al.

AGRICULTURAL SYSTEMS (2012)

Article Plant Sciences

DESIGNING A TRANSCRIPTOME NEXT-GENERATION SEQUENCING PROJECT FOR A NONMODEL PLANT SPECIES

Susan R. Strickler et al.

AMERICAN JOURNAL OF BOTANY (2012)

Editorial Material Plant Sciences

APPLICATIONS OF NEXT-GENERATION SEQUENCING IN PLANT BIOLOGY

Ashley N. Egan et al.

AMERICAN JOURNAL OF BOTANY (2012)

Review Plant Sciences

Plant Defense Against Herbivores: Chemical Aspects

Axel Mithoefer et al.

ANNUAL REVIEW OF PLANT BIOLOGY, VOL 63 (2012)

Article Biotechnology & Applied Microbiology

An elm EST database for identifying leaf beetle egg-induced defense genes

Kerstin Buechel et al.

BMC GENOMICS (2012)

Review Agronomy

Field-based phenomics for plant genetics research

Jeffrey W. White et al.

FIELD CROPS RESEARCH (2012)

Article Biochemistry & Molecular Biology

Metatranscriptomic analysis of small RNAs present in soybean deep sequencing libraries

Lorrayne Gomes Molina et al.

GENETICS AND MOLECULAR BIOLOGY (2012)

Article Plant Sciences

Insect oral secretions suppress wound-induced responses in Arabidopsis

Floriane Consales et al.

JOURNAL OF EXPERIMENTAL BOTANY (2012)

Review Biochemistry & Molecular Biology

Who is eating what: diet assessment using next generation sequencing

Francois Pompanon et al.

MOLECULAR ECOLOGY (2012)

Article Biochemistry & Molecular Biology

Phytozome: a comparative platform for green plant genomics

David M. Goodstein et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Biochemical Research Methods

High throughput phenotyping for aphid resistance in large plant collections

Xi Chen et al.

PLANT METHODS (2012)

Article Plant Sciences

Dissecting Plant Genomes with the PLAZA Comparative Genomics Platform

Michiel Van Bel et al.

PLANT PHYSIOLOGY (2012)

Article Plant Sciences

Climate Change: Resetting Plant-Insect Interactions

Evan H. DeLucia et al.

PLANT PHYSIOLOGY (2012)

Article Multidisciplinary Sciences

Metatranscriptomics Reveals the Diversity of Genes Expressed by Eukaryotes in Forest Soils

Coralie Damon et al.

PLOS ONE (2012)

Article Multidisciplinary Sciences

A Gain-of-Function Polymorphism Controlling Complex Traits and Fitness in Nature

Kasavajhala V. S. K. Prasad et al.

SCIENCE (2012)

Article Multidisciplinary Sciences

Natural Enemies Drive Geographic Variation in Plant Defenses

Tobias Zuest et al.

SCIENCE (2012)

Review Biotechnology & Applied Microbiology

Unraveling plant-microbe interactions: can multi-species transcriptomics help?

Peer M. Schenk et al.

TRENDS IN BIOTECHNOLOGY (2012)

Review Plant Sciences

Association mapping of plant resistance to insects

Karen J. Kloth et al.

TRENDS IN PLANT SCIENCE (2012)

Review Plant Sciences

Specialist versus generalist insect herbivores and plant defense

Jared G. Ali et al.

TRENDS IN PLANT SCIENCE (2012)

Article Biochemical Research Methods

A BioBrick compatible strategy for genetic modification of plants

Patrick M. Boyle et al.

JOURNAL OF BIOLOGICAL ENGINEERING (2012)

Review Biochemistry & Molecular Biology

Mechanisms of Plant Defense against Insect Herbivores

Abdul Rashid War et al.

PLANT SIGNALING & BEHAVIOR (2012)

Editorial Material Biochemistry & Molecular Biology

Plant Signalling Pathways: A Comparative Evolutionary Overview

Alistair M. Hetherington et al.

CURRENT BIOLOGY (2011)

Article Biochemistry & Molecular Biology

Herbivore-Induced Changes in Tomato (Solanum lycopersicum) Primary Metabolism: A Whole Plant Perspective

Adam D. Steinbrenner et al.

JOURNAL OF CHEMICAL ECOLOGY (2011)

Review Infectious Diseases

Plant-based insect repellents: a review of their efficacy, development and testing

Marta Ferreira Maia et al.

MALARIA JOURNAL (2011)

Article Multidisciplinary Sciences

Multiple reference genomes and transcriptomes for Arabidopsis thaliana

Xiangchao Gan et al.

NATURE (2011)

Article Biochemistry & Molecular Biology

Hymenoptera Genome Database: integrated community resources for insect species of the order Hymenoptera

Monica C. Munoz-Torres et al.

NUCLEIC ACIDS RESEARCH (2011)

Review Plant Sciences

Advances in Omics and Bioinformatics Tools for Systems Analyses of Plant Functions

Keiichi Mochida et al.

PLANT AND CELL PHYSIOLOGY (2011)

Letter Multidisciplinary Sciences

Creating a Buzz About Insect Genomes

Gene E. Robinson et al.

SCIENCE (2011)

Review Plant Sciences

Redefining plant systems biology: from cell to ecosystem

Joost J. B. Keurentjes et al.

TRENDS IN PLANT SCIENCE (2011)

Review Plant Sciences

Phenomics - technologies to relieve the phenotyping bottleneck

Robert T. Furbank et al.

TRENDS IN PLANT SCIENCE (2011)

Review Biochemistry & Molecular Biology

Metabolomics: the chemistry between ecology and genetics

Mirka Macel et al.

MOLECULAR ECOLOGY RESOURCES (2010)

Article Multidisciplinary Sciences

Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines

Susanna Atwell et al.

NATURE (2010)

Article Plant Sciences

VirtualPlant: A Software Platform to Support Systems Biology Research

Manpreet S. Katari et al.

PLANT PHYSIOLOGY (2010)

Article Plant Sciences

PlantMetabolomics.org: A Web Portal for Plant Metabolomics Experiments

Preeti Bais et al.

PLANT PHYSIOLOGY (2010)

Review Biochemical Research Methods

Plant secretome: Unlocking secrets of the secreted proteins

Ganesh Kumar Agrawal et al.

PROTEOMICS (2010)

Article Multidisciplinary Sciences

Creation of a Bacterial Cell Controlled by a Chemically Synthesized Genome

Daniel G. Gibson et al.

SCIENCE (2010)

Review Plant Sciences

Multiple stress factors and the emission of plant VOCs

Jarmo K. Holopainen et al.

TRENDS IN PLANT SCIENCE (2010)

Review Plant Sciences

The evolutionary context for herbivore-induced plant volatiles: beyond the 'cry for help'

Marcel Dicke et al.

TRENDS IN PLANT SCIENCE (2010)

Article Biotechnology & Applied Microbiology

Fourmidable: a database for ant genomics

Yannick Wurm et al.

BMC GENOMICS (2009)

Article Biotechnology & Applied Microbiology

KAIKObase: An integrated silkworm genome database and data mining tool

Michihiko Shimomura et al.

BMC GENOMICS (2009)

Review Biochemistry & Molecular Biology

Integrated omics approaches in plant systems biology

Atsushi Fukushima et al.

CURRENT OPINION IN CHEMICAL BIOLOGY (2009)

Article Biochemistry & Molecular Biology

NMR Metabolomics of Thrips (Frankliniella occidentalis) Resistance in Senecio Hybrids

Kirsten A. Leiss et al.

JOURNAL OF CHEMICAL ECOLOGY (2009)

Article Multidisciplinary Sciences

Precise genome modification in the crop species Zea mays using zinc-finger nucleases

Vipula K. Shukla et al.

NATURE (2009)

Review Biochemistry & Molecular Biology

Chemical complexity of volatiles from plants induced by multiple attack

Marcel Dicke et al.

NATURE CHEMICAL BIOLOGY (2009)

Article Endocrinology & Metabolism

Metabolomic analysis of the interaction between plants and herbivores

Jeroen J. Jansen et al.

METABOLOMICS (2009)

Article Plant Sciences

Identification of Chlorogenic Acid as a Resistance Factor for Thrips in Chrysanthemum

Kirsten A. Leiss et al.

PLANT PHYSIOLOGY (2009)

Article Multidisciplinary Sciences

Restoring a maize root signal that attracts insect-killing nematodes to control a major pest

Joerg Degenhardt et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

News Item Multidisciplinary Sciences

IMAGING With 'Phenomics,' Plant Scientists Hope to Shift Breeding Into Overdrive

Elizabeth Finkel

SCIENCE (2009)

Article Biochemistry & Molecular Biology

Belowground ABA boosts aboveground production of DIMBOA and primes induction of chlorogenic acid in maize

Matthias Erb et al.

PLANT SIGNALING & BEHAVIOR (2009)

Review Plant Sciences

Plant immunity to insect herbivores

Gregg A. Howe et al.

ANNUAL REVIEW OF PLANT BIOLOGY (2008)

Article Biotechnology & Applied Microbiology

WildSilkbase: An EST database of wild silkmoths

K. P. Arunkumar et al.

BMC GENOMICS (2008)

Editorial Material Biochemistry & Molecular Biology

Complexity in biology - Exceeding the limits of reductionism and de using complexity theory

Fulvio Mazzocchi

EMBO REPORTS (2008)

Letter Plant Sciences

Cultivating plant synthetic biology from systems biology

Tessa A. Bowen et al.

NEW PHYTOLOGIST (2008)

Review Plant Sciences

Indirect defence via tritrophic interactions

Martin Heil

NEW PHYTOLOGIST (2008)

Article Plant Sciences

Ecological genomics of plant-insect interactions: From gene to community

Si-Jun Zheng et al.

PLANT PHYSIOLOGY (2008)

Article Plant Sciences

Biotechnological prospects for engineering insect-resistant plants

John A. Gatehouse

PLANT PHYSIOLOGY (2008)

Article Plant Sciences

Cross talk in defense signaling

Annemart Koornneef et al.

PLANT PHYSIOLOGY (2008)

Editorial Material Multidisciplinary Sciences

Perspective - From genotype to phenotype: Systems biology meets natural variation

Philip N. Benfey et al.

SCIENCE (2008)

Review Plant Sciences

Plant systems biology comes of age

Joshua S. Yuan et al.

TRENDS IN PLANT SCIENCE (2008)

Article Mathematical & Computational Biology

Dung beetle database: comparison with other invertebrate transcriptomes

Lucky M. Khanyile et al.

BIOINFORMATION (2008)

Review Plant Sciences

Plant interactions with microbes and insects: from molecular mechanisms to ecology

Corne M. J. Pieterse et al.

TRENDS IN PLANT SCIENCE (2007)

Article Plant Sciences

Sampling the arabidopsis transcriptome with massively parallel pyrosequencing

Andreas P. M. Weber et al.

PLANT PHYSIOLOGY (2007)

Article Biochemical Research Methods

AphidBase: a database for aphid genomic resources

Jean-Pierre Gauthier et al.

BIOINFORMATICS (2007)

Review Plant Sciences

Understanding sample size: what determines the required number of microarrays for an experiment?

Tommy S. Jorstad et al.

TRENDS IN PLANT SCIENCE (2007)

Article Biochemistry & Molecular Biology

InSatDb: a microsatellite database of fully sequenced insect genomes

Sunil Archak et al.

NUCLEIC ACIDS RESEARCH (2007)

Letter Biotechnology & Applied Microbiology

Statistical methods and microarray data

Lev Klebanov et al.

NATURE BIOTECHNOLOGY (2007)

Article Biochemistry & Molecular Biology

DroSpeGe: rapid access database for new Drosophila species genomes

Donald G. Gilbert

NUCLEIC ACIDS RESEARCH (2007)

Review Plant Sciences

Ecogenomic approach to the role of herbivore-induced plant volatiles in community ecology

Tjeerd A. L. Snoeren et al.

JOURNAL OF ECOLOGY (2007)

Article Biochemistry & Molecular Biology

Plants Under Attack Multiple Interactions with Insects and Microbes

Martin De Vos et al.

PLANT SIGNALING & BEHAVIOR (2007)

Article Genetics & Heredity

The genetics of plant metabolism

Joost J. B. Keurentjes et al.

NATURE GENETICS (2006)

Article Biochemical Research Methods

SPODOBASE :: an EST database for the lepidopteran crop pest Spodoptera

Vincent Negre et al.

BMC BIOINFORMATICS (2006)

Article Plant Sciences

Transcriptomics and functional genomics of plant defence induction by phloem-feeding insects

GA Thompson et al.

JOURNAL OF EXPERIMENTAL BOTANY (2006)

Review Neurosciences

Mathematical modeling of intracellular signaling pathways

Edda Klipp et al.

BMC NEUROSCIENCE (2006)

Review Plant Sciences

Fine-tuning plant defence signalling: Salicylate versus jasmonate

GJM Beckers et al.

PLANT BIOLOGY (2006)

Review Plant Sciences

Abiotic stress, the field environment and stress combination

R Mittler

TRENDS IN PLANT SCIENCE (2006)

Article Biochemistry & Molecular Biology

Signal signature and transcriptome changes of Arabidopsis during pathogen and insect attack

M De Vos et al.

MOLECULAR PLANT-MICROBE INTERACTIONS (2005)

Article Biology

Population dynamics models in plant-insect herbivore-pesticide interactions

BM Adams et al.

MATHEMATICAL BIOSCIENCES (2005)

Article Multidisciplinary Sciences

Metabolic engineering of dhurrin in transgenic Arabidopsis plants with marginal inadvertent effects on the metabolome and transcriptome

C Kristensen et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Review Plant Sciences

Regulation of the Arabidopsis defense transcriptome

T Eulgem

TRENDS IN PLANT SCIENCE (2005)

Article Plant Sciences

On systems thinking, systems biology, and the in silico plant

GL Hammer et al.

PLANT PHYSIOLOGY (2004)

Article Biochemical Research Methods

cuticleDB: a relational database of Arthropod cuticular proteins

CK Magkrioti et al.

BMC BIOINFORMATICS (2004)

Article Biochemistry & Molecular Biology

A conserved transcript pattern in response to a specialist and a generalist herbivore

P Reymond et al.

PLANT CELL (2004)

Article Biochemistry & Molecular Biology

Gene expression profiling of Arabidopsis thaliana in compatible plant-aphid interactions

PJ Moran et al.

ARCHIVES OF INSECT BIOCHEMISTRY AND PHYSIOLOGY (2002)

Review Plant Sciences

Plant resistance towards insect herbivores: a dynamic interaction

JA Gatehouse

NEW PHYTOLOGIST (2002)

Article Agriculture, Multidisciplinary

Computerised video tracking, movement analysis and behaviour recognition in insects

LPJJ Noldus et al.

COMPUTERS AND ELECTRONICS IN AGRICULTURE (2002)

Article Agriculture, Multidisciplinary

Simulation of insect movement with respect to plant architecture and morphogenesis

J Hanan et al.

COMPUTERS AND ELECTRONICS IN AGRICULTURE (2002)

Article Plant Sciences

The effects of abiotic factors on induced volatile emissions in corn plants

SP Gouinguené et al.

PLANT PHYSIOLOGY (2002)

Article Biochemistry & Molecular Biology

Gene Expression Omnibus: NCBI gene expression and hybridization array data repository

R Edgar et al.

NUCLEIC ACIDS RESEARCH (2002)

Review Plant Sciences

Merging molecular and ecological approaches in plant-insect interactions

IT Baldwin et al.

CURRENT OPINION IN PLANT BIOLOGY (2001)

Article Multidisciplinary Sciences

Bean α-amylase inhibitor 1 in transgenic peas (Pisum sativum) provides complete protection from pea weevil (Bruchus pisorum) under field conditions

RL Morton et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2000)