Related references
Note: Only part of the references are listed.Isostericity and tautomerism of base pairs in nucleic acids
Eric Westhof
FEBS LETTERS (2014)
Properties of 5- and/or 2-modified 2′-O-cyanoethyl uridine residue: 2′-O-cyanoethyl-5-propynyl-2-thiouridine as an efficient duplex stabilizing component
Yoshiaki Masaki et al.
ORGANIC & BIOMOLECULAR CHEMISTRY (2014)
Biosynthesis and functions of sulfur modifications in tRNA
Naoki Shigi
FRONTIERS IN GENETICS (2014)
Desulfuration of 2-thiouridine with hydrogen peroxide in the physiological pH range 6.6-7.6 is pH-dependent and results in two distinct products
Elzbieta Sochacka et al.
BIOORGANIC & MEDICINAL CHEMISTRY LETTERS (2013)
How to understand quantum chemical computations on DNA and RNA systems? A practical guide for non-specialists
Jiri Sponer et al.
METHODS (2013)
MODOMICS: a database of RNA modification pathways-2013 update
Magdalena A. Machnicka et al.
NUCLEIC ACIDS RESEARCH (2013)
Native Tertiary Structure and Nucleoside Modifications Suppress tRNA's Intrinsic Ability to Activate the Innate Immune Sensor PKR
Subba Rao Nallagatla et al.
PLOS ONE (2013)
Transfer RNA modifications: nature's combinatorial chemistry playground
Jane E. Jackman et al.
WILEY INTERDISCIPLINARY REVIEWS-RNA (2013)
Human tRNALYs3UUU Is Pre-Structured by Natural Modifications for Cognate and Wobble Codon Binding through Keto-Enol Tautomerism
Franck A. P. Vendeix et al.
JOURNAL OF MOLECULAR BIOLOGY (2012)
A new understanding of the decoding principle on the ribosome
Natalia Demeshkina et al.
NATURE (2012)
Phosphorothioate DNA as an antioxidant in bacteria
Xinqiang Xie et al.
NUCLEIC ACIDS RESEARCH (2012)
Solvent effects on hydrogen bonds in Watson-Crick, mismatched, and modified DNA base pairs
Jordi Poater et al.
COMPUTATIONAL AND THEORETICAL CHEMISTRY (2012)
Desulfurization of 2-thiouracil nucleosides: Conformational studies of 4-pyrimidinone nucleosides
Karina Kraszewska et al.
BIOORGANIC & MEDICINAL CHEMISTRY (2011)
tRNA structural and functional changes induced by oxidative stress
Barbara Nawrot et al.
CELLULAR AND MOLECULAR LIFE SCIENCES (2011)
The 2-thiouridine unit in the RNA strand is desulfured predominantly to 4-pyrimidinone nucleoside under in vitro oxidative stress conditions
Elzbieta Sochacka et al.
CHEMICAL COMMUNICATIONS (2011)
Binding of metal ions by pyrimidine base pairs in DNA duplexes
Akira Ono et al.
CHEMICAL SOCIETY REVIEWS (2011)
The RNA modification database, RNAMDB: 2011 update
William A. Cantara et al.
NUCLEIC ACIDS RESEARCH (2011)
Human P2Y14 Receptor Agonists: Truncation of the Hexose Moiety of Uridine-5′-Diphosphoglucose and Its Replacement with Alkyl and Aryl Groups
Arijit Das et al.
JOURNAL OF MEDICINAL CHEMISTRY (2010)
Antioxidant Activity of Sulfur and Selenium: A Review of Reactive Oxygen Species Scavenging, Glutathione Peroxidase, and Metal-Binding Antioxidant Mechanisms
Erin E. Battin et al.
CELL BIOCHEMISTRY AND BIOPHYSICS (2009)
ACTIVITY OF siRNAs WITH 2-THIO-2′-O-METHYLURIDINE MODIFICATION IN MAMMALIAN CELLS
Thazha P. Prakash et al.
NUCLEOSIDES NUCLEOTIDES & NUCLEIC ACIDS (2009)
The Crystal Structure of the Ribosome Bound to EF-Tu and Aminoacyl-tRNA
T. Martin Schmeing et al.
SCIENCE (2009)
Study of the base discrimination ability of DNA and 2′-O-methylated RNA oligomers containing 2-thiouracil bases towards complementary RNA or DNA strands and their application to single base mismatch detection
Itaru Okamoto et al.
BIOORGANIC & MEDICINAL CHEMISTRY (2008)
Synthesis and potency of novel uracil nucleotides and derivatives as P2Y2 and P2Y6 receptor agonists
Hyojin Ko et al.
BIOORGANIC & MEDICINAL CHEMISTRY (2008)
Bringing order to translation: the contributions of transfer RNA anticodon-domain modifications
Paul F. Agris
EMBO REPORTS (2008)
Eukaryotic wobble uridine modifications promote a functionally redundant decoding system
Marcus J. O. Johansson et al.
MOLECULAR AND CELLULAR BIOLOGY (2008)
Long-range corrected hybrid density functionals with damped atom-atom dispersion corrections
Jeng-Da Chai et al.
PHYSICAL CHEMISTRY CHEMICAL PHYSICS (2008)
Nucleoside modifications modulate activation of the protein kinase PKR in an RNA structure-specific manner
Subba Rao Nallagatla et al.
RNA (2008)
tRNA cleavage is a conserved response to oxidative stress in eukaryotes
Debrah M. Thompson et al.
RNA (2008)
Effect of base modifications on structure, thermodynamic stability, and gene silencing activity of short interfering RNA
Katarzyna Sipa et al.
RNA (2007)
Role of modified Nucleosides in the translation function of tRNAs from extreme thermophilic bacteria and animal mitochondria
Kimitsuna Watanabe
BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN (2007)
Molecular modeling of the human P2Y2 receptor and design of a selective agonist, 2′-amino-2′-deoxy-2-thiouridine 5′-triphosphate
Andrei A. Ivanov et al.
JOURNAL OF MEDICINAL CHEMISTRY (2007)
tRNA's wobble decoding of the genome: 40 years of modification
Paul F. Agris et al.
JOURNAL OF MOLECULAR BIOLOGY (2007)
Classification of the possible pairs between the first anticodon and the third codon positions based on a simple model assuming two geometries with which the pairing effectively potentiates the decoding complex
Kazuyuki Takai
JOURNAL OF THEORETICAL BIOLOGY (2006)
Enhanced base pairing and replication efficiency of thiothymidines, expanded-size variants of thymidine
HO Sintim et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2006)
Facilitating RNA structure prediction with microarrays
E Kierzek et al.
BIOCHEMISTRY (2006)
Incorporation of 2′-O-methyl-2-thiouridine into oligoribonucleotides induced stable A-form structure
I Okamoto et al.
CHEMISTRY LETTERS (2006)
Suppression of RNA recognition by Toll-like receptors:: The impact of nucleoside modification and the evolutionary origin of RNA
K Karikó et al.
IMMUNITY (2005)
The use of thymidine analogs to improve the replication of an extra DNA base pair: a synthetic biological system
AM Sismour et al.
NUCLEIC ACIDS RESEARCH (2005)
Stabilizing contributions of sulfur-modified nucleotides: crystal structure of a DNA duplex with 2 '-O-[2-(methoxy)ethyl]-2-thiothymidines
B Diop-Frimpong et al.
NUCLEIC ACIDS RESEARCH (2005)
Efficient desulfurization of 2-thiopyrimidine nucleosides to the corresponding 4-pyrimidinone analogues using trans-2-(phenylsulfonyl)-3-phenyloxaziridine
E Sochacka et al.
TETRAHEDRON LETTERS (2004)
Accurate interaction energies of hydrogen-bonded nucleic acid base pairs
J Sponer et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2004)
Diversity of base-pair conformations and their occurrence in rRNA structure and RNA structural motifs
JC Lee et al.
JOURNAL OF MOLECULAR BIOLOGY (2004)
Roles of 5-substituents of tRNA wobble uridines in the recognition of purine-ending codons
K Takai et al.
NUCLEIC ACIDS RESEARCH (2003)
Tuning of conformational preorganization in model 2′,5′- and 3′,5′-linked oligonucleotides by 3′- and 2′-O-methoxyethyl modification
M Polak et al.
NUCLEIC ACIDS RESEARCH (2003)
A standard reference frame for the description of nucleic acid base-pair geometry
WK Olson et al.
JOURNAL OF MOLECULAR BIOLOGY (2001)
Modified nucleoside dependent Watson-Crick and wobble codon binding by tRNALysUUU species
C Yarian et al.
BIOCHEMISTRY (2000)
Hypermodified nucleosides in the anticodon of tRNALys stabilize a canonical U-turn structure
M Sundaram et al.
BIOCHEMISTRY (2000)
Comparison of the CH•••N and CH•••O interactions involving substituted alkanes
Y Gu et al.
JOURNAL OF MOLECULAR STRUCTURE (2000)
Synthesis and properties of 2′-O-methyl-2-thiouridine and oligoribonucleotides containing 2′-O-methyl-2-thiouridine
K Shohda et al.
BIOORGANIC & MEDICINAL CHEMISTRY LETTERS (2000)