Journal
NUCLEIC ACIDS RESEARCH
Volume 44, Issue D1, Pages D801-D807Publisher
OXFORD UNIV PRESS
DOI: 10.1093/nar/gkv1204
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Funding
- National Basic Research Program of China [2013CB127600, 2012CB114102]
- Science and Technology Research Project of the Ministry of Education [V201308]
- National High Technology Research and Development Program ('863' Program) of China [2012AA101505]
- National Science Foundation of China [31171843, 31301691, 31260431]
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The genomes and transcriptomes of hundreds of insects have been sequenced. However, insect community lacks an integrated, up-to-date collection of insect gene data. Here, we introduce the first release of InsectBase, available online at http://www.insect-genome.com. The database encompasses 138 insect genomes, 116 insect transcriptomes, 61 insect gene sets, 36 gene families of 60 insects, 7544 miRNAs of 69 insects, 96 925 piRNAs of Drosophila melanogaster and Chilo suppressalis, 2439 lncRNA of Nilaparvata lugens, 22 536 pathways of 78 insects, 678 881 untranslated regions (UTR) of 84 insects and 160 905 coding sequences (CDS) of 70 insects. This release contains over 12 million sequences and provides search functionality, a BLAST server, GBrowse, insect pathway construction, a Facebook-like network for the insect community (iFacebook), and phylogenetic analysis of selected genes.
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