Related references
Note: Only part of the references are listed.In vivo genome-wide profiling of RNA secondary structure reveals novel regulatory features
Yiliang Ding et al.
NATURE (2014)
Genome-wide probing of RNA structure reveals active unfolding of mRNA structures in vivo
Silvi Rouskin et al.
NATURE (2014)
MOLECULAR BIOLOGY A second layer of information in RNA
Silvia B. V. Ramos et al.
NATURE (2014)
Landscape and variation of RNA secondary structure across the human transcriptome
Yue Wan et al.
NATURE (2014)
RiboSNitches reveal heredity in RNA secondary structure RNA
Isabel Lokody
NATURE REVIEWS GENETICS (2014)
Mapping the Kinetic Barriers of a Large RNA Molecule's Folding Landscape
Joerg C. Schlatterer et al.
PLOS ONE (2014)
Mod-seq: high-throughput sequencing for chemical probing of RNA structure
Jason Talkish et al.
RNA (2014)
Alu elements shape the primate transcriptome by cis-regulation of RNA editing
Chammiran Daniel et al.
GENOME BIOLOGY (2014)
Structural Studies of RNase P
Alfonso Mondragon
ANNUAL REVIEW OF BIOPHYSICS, VOL 42 (2013)
Understanding the Role of Three-Dimensional Topology in Determining the Folding Intermediates of Group I Introns
Chunxia Chen et al.
BIOPHYSICAL JOURNAL (2013)
A heterozygous variant in the human cardiac miR-133 gene, MIR133A2, alters miRNA duplex processing and strand abundance
Monique Ohanian et al.
BMC GENETICS (2013)
Sensitive measurement of single-nucleotide polymorphism-induced changes of RNA conformation: application to disease studies
Raheleh Salari et al.
NUCLEIC ACIDS RESEARCH (2013)
The RNAsnp web server: predicting SNP effects on local RNA secondary structure
Radhakrishnan Sabarinathan et al.
NUCLEIC ACIDS RESEARCH (2013)
Coupling pre-mRNA processing to transcription on the RNA factory assembly line
Kuo-Ming Lee et al.
RNA BIOLOGY (2013)
On the importance of cotranscriptional RNA structure formation
Daniel Lai et al.
RNA (2013)
Site identification in high-throughput RNA-protein interaction data
Philip J. Uren et al.
BIOINFORMATICS (2012)
Evaluating our ability to predict the structural disruption of RNA by SNPs
Justin Ritz et al.
BMC GENOMICS (2012)
Genome-wide Measurement of RNA Folding Energies
Yue Wan et al.
MOLECULAR CELL (2012)
Structural effects of linkage disequilibrium on the transcriptome
Joshua S. Martin et al.
RNA (2012)
RNASTAR: An RNA STructural Alignment Repository that provides insight into the evolution of natural and artificial RNAs
Jeremy Widmann et al.
RNA (2012)
Structure of transfer RNAs: similarity and variability
Richard Giege et al.
WILEY INTERDISCIPLINARY REVIEWS-RNA (2012)
ViennaRNA Package 2.0
Ronny Lorenz et al.
ALGORITHMS FOR MOLECULAR BIOLOGY (2011)
pROC: an open-source package for R and S plus to analyze and compare ROC curves
Xavier Robin et al.
BMC BIOINFORMATICS (2011)
Mutation of the 5′-Untranslated Region Stem-Loop Structure Inhibits α1(I) Collagen Expression in Vivo
Christopher J. Parsons et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2011)
The Azoarcus Group I Intron Ribozyme Misfolds and Is Accelerated for Refolding by ATP-dependent RNA Chaperone Proteins
Selma Sinan et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2011)
Meeting report of the RNA Ontology Consortium January 8-9, 2011
Amanda Birmingham et al.
Standards in Genomic Sciences (2011)
RNAstructure: software for RNA secondary structure prediction and analysis
Jessica S. Reuter et al.
BMC BIOINFORMATICS (2010)
Non-coding RNAs: regulators of disease
Ryan J. Taft et al.
JOURNAL OF PATHOLOGY (2010)
Clinical assessment incorporating a personal genome
Euan A. Ashley et al.
LANCET (2010)
Genome-wide measurement of RNA secondary structure in yeast
Michael Kertesz et al.
NATURE (2010)
FragSeq: transcriptome-wide RNA structure probing using high-throughput sequencing
Jason G. Underwood et al.
NATURE METHODS (2010)
NNDB: the nearest neighbor parameter database for predicting stability of nucleic acid secondary structure
Douglas H. Turner et al.
NUCLEIC ACIDS RESEARCH (2010)
RNA folding in living cells
Georgeta Zemora et al.
RNA BIOLOGY (2010)
Evaluation of the information content of RNA structure mapping data for secondary structure prediction
Scott Quarrier et al.
RNA (2010)
RNAcontext: A New Method for Learning the Sequence and Structure Binding Preferences of RNA-Binding Proteins
Hilal Kazan et al.
PLOS COMPUTATIONAL BIOLOGY (2010)
Disease-Associated Mutations That Alter the RNA Structural Ensemble
Matthew Halvorsen et al.
PLOS GENETICS (2010)
Prediction of RNA secondary structure using generalized centroid estimators
Michiaki Hamada et al.
BIOINFORMATICS (2009)
Slow formation of a pseudoknot structure is rate limiting in the productive co-transcriptional folding of the self-splicing Candida intron
Libin Zhang et al.
RNA (2009)
An efficient method for the prediction of deleterious multiple-point mutations in the secondary structure of RNAs using suboptimal folding solutions
Alexander Churkin et al.
BMC BIOINFORMATICS (2008)
ROC analysis: applications to the classification of biological sequences and 3D structures
Paolo Sonego et al.
BRIEFINGS IN BIOINFORMATICS (2008)
The MC-Fold and MC-Sym pipeline infers RNA structure from sequence data
Marc Parisien et al.
NATURE (2008)
High-throughput SHAPE analysis reveals structures in HIV-1 genomic RNA strongly conserved across distinct biological states
Kevin A. Wilkinson et al.
PLOS BIOLOGY (2008)
Efficient Algorithms for Probing the RNA Mutation Landscape
Jerome Waldispuhl et al.
PLOS COMPUTATIONAL BIOLOGY (2008)
Efficient sampling of RNA secondary structures from the Boltzmann ensemble of low-energy
Yann Ponty
JOURNAL OF MATHEMATICAL BIOLOGY (2008)
Mutational spectrum of delta-globin gene in the Portuguese population
Ana Morgado et al.
EUROPEAN JOURNAL OF HAEMATOLOGY (2007)
Computing the partition function and sampling for saturated secondary structures of RNA, with respect to the Turner energy model
J. Waldispuhl et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2007)
Self-splicing of a group I intron reveals partitioning of native and misfolded RNA populations in yeast
Scott A. Jackson et al.
RNA (2006)
Structure of an RNA switch that enforces stringent retroviral genomic RNA dimerization
Christopher S. Badorrek et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
MoD Tools: regulatory motif discovery in nucleotide sequences from co-regulated or homologous genes
Giulio Pavesi et al.
NUCLEIC ACIDS RESEARCH (2006)
CONTRAfold: RNA secondary structure prediction without physics-based models
Chuong B. Do et al.
BIOINFORMATICS (2006)
Beyond Mfold:: recent advances in RNA bioinformatics
Jens Reeder et al.
JOURNAL OF BIOTECHNOLOGY (2006)
RNAmute: RNA secondary structure mutation analysis tool
Alexander Churkin et al.
BMC BIOINFORMATICS (2006)
Endonucleolytic cleavage of eukaryotic mRNAs with stalls in translation elongation
MK Doma et al.
NATURE (2006)
RNA flexibility in the dimerization domain of a gamma retrovirus
CS Badorrek et al.
NATURE CHEMICAL BIOLOGY (2005)
A comprehensive comparison of comparative RNA structure prediction approaches
PP Gardner et al.
BMC BIOINFORMATICS (2004)
Strategies for RNA folding and assembly
R Schroeder et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2004)
Intracellular folding of the Tetrahymena group I intron depends on exon sequence and promoter choice
SP Koduvayur et al.
RNA (2004)
A mechanistic framework for co-transcriptional folding of the HDV genomic ribozyme in the presence of downstream sequence
A Diegelman-Parente et al.
JOURNAL OF MOLECULAR BIOLOGY (2002)
Recent insights on RNA folding mechanisms from catalytic RNA
SA Woodson
CELLULAR AND MOLECULAR LIFE SCIENCES (2000)
Share Paper
