Related references
Note: Only part of the references are listed.Crystallographic and Computational Analyses of AUUCU Repeating RNA That Causes Spinocerebellar Ataxia Type 10 (SCA10)
HaJeung Park et al.
BIOCHEMISTRY (2015)
Effects of Molecular Crowding on the Structures, Interactions, and Functions of Nucleic Acids
Shu-ichi Nakano et al.
CHEMICAL REVIEWS (2014)
Unfolding and Conformational Variations of ThrombinBinding DNA Aptamers: Synthesis, Circular Dichroism and Molecular Dynamics Simulations
Lidan Sun et al.
CHEMMEDCHEM (2014)
Hydration Changes Accompanying Helix-to-Coil DNA Transitions
Ikbae Son et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2014)
Molecular dynamics simulation of a single-stranded DNA with heterogeneous distribution of nucleobases in aqueous medium
Kaushik Chakraborty et al.
JOURNAL OF CHEMICAL PHYSICS (2013)
PTRAJ and CPPTRAJ: Software for Processing and Analysis of Molecular Dynamics Trajectory Data
Daniel R. Roe et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2013)
Structure and Function of Noncanonical Nucleobases
Thomas Carell et al.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2012)
What determines water-bridge lifetimes at the surface of DNA? Insight from systematic molecular dynamics analysis of water kinetics for various DNA sequences
Yoshiteru Yonetani et al.
BIOPHYSICAL CHEMISTRY (2012)
Hydration Changes upon DNA Folding Studied by Osmotic Stress Experiments
Shu-ichi Nakano et al.
BIOPHYSICAL JOURNAL (2012)
Triplexator: Detecting nucleic acid triple helices in genomic and transcriptomic data
Fabian A. Buske et al.
GENOME RESEARCH (2012)
DNA triplex structures in neurodegenerative disorder, Friedreich's ataxia
Moganty R. Rajeswari
JOURNAL OF BIOSCIENCES (2012)
Free-Energy Landscape of a Thrombin-Binding DNA Aptamer in Aqueous Environment
Eunae Kim et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2012)
Solvent and Salt Effects on Structural Stability of Human Telomere
Yutaka Maruyama et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2011)
BIOPHYSICS Flipping Watson and Crick
Barry Honig et al.
NATURE (2011)
A hybrid all-atom/coarse grain model for multiscale simulations of DNA
Matias Rodrigo Machado et al.
PHYSICAL CHEMISTRY CHEMICAL PHYSICS (2011)
Cation binding to 15-TBA quadruplex DNA is a multiple-pathway cation-dependent process
Roman V. Reshetnikov et al.
NUCLEIC ACIDS RESEARCH (2011)
Mutant CAG repeats of Huntingtin transcript fold into hairpins, form nuclear foci and are targets for RNA interference
Mateusz de Mezer et al.
NUCLEIC ACIDS RESEARCH (2011)
Potential in vivo roles of nucleic acid triple-helices
Fabian A. Buske et al.
RNA BIOLOGY (2011)
Non-B DNA structure-induced genetic instability and evolution
Junhua Zhao et al.
CELLULAR AND MOLECULAR LIFE SCIENCES (2010)
Diversity in DNA recognition by p53 revealed by crystal structures with Hoogsteen base pairs
Malka Kitayner et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2010)
PACKMOL: A Package for Building Initial Configurations for Molecular Dynamics Simulations
L. Martinez et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2009)
Hydration of Watson-Crick Base Pairs and Dehydration of Hoogsteen Base Pairs Inducing Structural Polymorphism under Molecular Crowding Conditions
Daisuke Miyoshi et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2009)
Facilitation of RNA Enzyme Activity in the Molecular Crowding Media of Cosolutes
Shu-ichi Nakano et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2009)
Molecular crowding effects on structure and stability of DNA
Daisuke Miyoshi et al.
BIOCHIMIE (2008)
Discovery of alternative DNA structures: a heroic decade (1979-1989)
Sergei M. Mirkin
FRONTIERS IN BIOSCIENCE-LANDMARK (2008)
Conformation and the sodium ion condensation on DNA and RNA structures in the presence of a neutral cosolute as a mimic of the intracellular media
Shu-ichi Nakano et al.
MOLECULAR BIOSYSTEMS (2008)
Unfolding and melting of DNA (RNA) hairpins: the concept of structure-specific 2D dynamic landscapes
Milo M. Lin et al.
PHYSICAL CHEMISTRY CHEMICAL PHYSICS (2008)
Refinenement of the AMBER force field for nucleic acids:: Improving the description of α/γ conformers
Alberto Perez et al.
BIOPHYSICAL JOURNAL (2007)
Structural basis for binding of porphyrin to human telomeres
Gary N. Parkinson et al.
BIOCHEMISTRY (2007)
Consecutive GC base pairs determine the energy barrier of DNA duplex formation under molecularly crowded conditions
Xiao-Bo Gu et al.
CHEMICAL COMMUNICATIONS (2007)
Automatic atom type and bond type perception in molecular mechanical calculations
Junmei Wang et al.
JOURNAL OF MOLECULAR GRAPHICS & MODELLING (2006)
Mass spectrometry reveals specific and global molecular transformations during viral infection
Eden P. Go et al.
JOURNAL OF PROTEOME RESEARCH (2006)
Effect of ethylene glycol, urea, and N-methylated glycines on DNA thermal stability: The role of DNA base pair composition and hydration
Larisa J. Nordstrom et al.
BIOCHEMISTRY (2006)
Hydration regulates thermodynamics of G-quadruplex formation under molecular crowding conditions
Daisuke Miyoshi et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2006)
The denaturation transition of DNA in mixed solvents
Boualem Hammouda et al.
BIOPHYSICAL JOURNAL (2006)
Going against the grain:: Chemotaxis and infection in Vibrio cholerae
SM Butler et al.
NATURE REVIEWS MICROBIOLOGY (2005)
Probing single-stranded DNA conformational flexibility using fluorescence spectroscopy
MC Murphy et al.
BIOPHYSICAL JOURNAL (2004)
Development and testing of a general amber force field
JM Wang et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2004)
Replication by human DNA polymerase-ι occurs by Hoogsteen base-pairing
DT Nair et al.
NATURE (2004)
The effect of molecular crowding with nucleotide length and cosolute structure on DNA duplex stability
S Nakano et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2004)
Hydration of short DNA, RNA and 2 '-OMe oligonucleotides determined by osmotic stressing
E Rozners et al.
NUCLEIC ACIDS RESEARCH (2004)
Unusual DNA duplex and hairpin motifs
SH Chou et al.
NUCLEIC ACIDS RESEARCH (2003)
Molecular crowding regulates the structural switch of the DNA G-quadruplex
D Miyoshi et al.
BIOCHEMISTRY (2002)
The influence of macromolecular crowding and macromolecular confinement on biochemical reactions in physiological media
AP Minton
JOURNAL OF BIOLOGICAL CHEMISTRY (2001)
Macromolecular crowding: an important but neglected aspect of the intracellular environment
RJ Ellis
CURRENT OPINION IN STRUCTURAL BIOLOGY (2001)
Structures of the potassium-saturated, 2:1, and intermediate, 1:1,forms of a quadruplex DNA
VM Marathias et al.
NUCLEIC ACIDS RESEARCH (2000)
Share Paper
