Related references
Note: Only part of the references are listed.A new ensemble coevolution system for detecting HIV-1 protein coevolution
Guangdi Li et al.
BIOLOGY DIRECT (2015)
newDNA-Prot: Prediction of DNA-binding proteins by employing support vector machine and a comprehensive sequence representation
Yanping Zhang et al.
COMPUTATIONAL BIOLOGY AND CHEMISTRY (2014)
Predicting DNA binding proteins using support vector machine with hybrid fractal features
Xiao-Hui Niu et al.
JOURNAL OF THEORETICAL BIOLOGY (2014)
The structure, function and evolution of proteins that bind DNA and RNA
William H. Hudson et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2014)
Pfam: the protein families database
Robert D. Finn et al.
NUCLEIC ACIDS RESEARCH (2014)
Protein-DNA binding: complexities and multi-protein codes
Trevor Siggers et al.
NUCLEIC ACIDS RESEARCH (2014)
Sequence Based Prediction of DNA-Binding Proteins Based on Hybrid Feature Selection Using Random Forest and Gaussian Naive Bayes
Wangchao Lou et al.
PLOS ONE (2014)
iDNA-Prot|dis: Identifying DNA-Binding Proteins by Incorporating Amino Acid Distance-Pairs and Reduced Alphabet Profile into the General Pseudo Amino Acid Composition
Bin Liu et al.
PLOS ONE (2014)
An improved sequence based prediction protocol for DNA-binding proteins using SVM and comprehensive feature analysis
Chuanxin Zou et al.
BMC BIOINFORMATICS (2013)
A large-scale evaluation of computational protein function prediction
Predrag Radivojac et al.
NATURE METHODS (2013)
Single-Stranded DNA-Binding Proteins: Multiple Domains for Multiple Functions
Thayne H. Dickey et al.
STRUCTURE (2013)
DNA-binding domains of plant-specific transcription factors: structure, function, and evolution
Kazuhiko Yamasaki et al.
TRENDS IN PLANT SCIENCE (2013)
SPINE X: Improving protein secondary structure prediction by multistep learning coupled with prediction of solvent accessible surface area and backbone torsion angles
Eshel Faraggi et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2012)
The tomato genome sequence provides insights into fleshy fruit evolution
Shusei Sato et al.
NATURE (2012)
Transcription factors regulating the progression of monocot and dicot seed development
Pinky Agarwal et al.
BIOESSAYS (2011)
Non-DNA-binding cofactors enhance DNA-binding specificity of a transcriptional regulatory complex
Trevor Siggers et al.
MOLECULAR SYSTEMS BIOLOGY (2011)
Transcription Dynamics in Plant Immunity
John W. Moore et al.
PLANT CELL (2011)
iDNA-Prot: Identification of DNA Binding Proteins Using Random Forest with Grey Model
Wei-Zhong Lin et al.
PLOS ONE (2011)
LIBSVM: A Library for Support Vector Machines
Chih-Chung Chang et al.
ACM TRANSACTIONS ON INTELLIGENT SYSTEMS AND TECHNOLOGY (2011)
PiRaNhA: a server for the computational prediction of RNA-binding residues in protein sequences
Yoichi Murakami et al.
NUCLEIC ACIDS RESEARCH (2010)
Boosting the prediction and understanding of DNA-binding domains from sequence
Robert E. Langlois et al.
NUCLEIC ACIDS RESEARCH (2010)
agriGO: a GO analysis toolkit for the agricultural community
Zhou Du et al.
NUCLEIC ACIDS RESEARCH (2010)
Lineage-specific expansion of DNA-binding transcription factor families
Varodom Charoensawan et al.
TRENDS IN GENETICS (2010)
AmiGO: online access to ontology and annotation data
Seth Carbon et al.
BIOINFORMATICS (2009)
QuickGO: a web-based tool for Gene Ontology searching
David Binns et al.
BIOINFORMATICS (2009)
DNA-Prot: Identification of DNA Binding Proteins from Protein Sequence Information using Random Forest
K. Krishna Kumar et al.
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS (2009)
A Threading-Based Method for the Prediction of DNA-Binding Proteins with Application to the Human Genome
Mu Gao et al.
PLOS COMPUTATIONAL BIOLOGY (2009)
The zinc finger network of plants
S. Ciftci-Yilmaz et al.
CELLULAR AND MOLECULAR LIFE SCIENCES (2008)
MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
Juergen Cox et al.
NATURE BIOTECHNOLOGY (2008)
Classifying RNA-Binding Proteins Based on Electrostatic Properties
Shula Shazman et al.
PLOS COMPUTATIONAL BIOLOGY (2008)
Predicting protein function from sequence and structure
David Lee et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2007)
Identification of DNA-binding proteins using support vector machines and evolutionary profiles
Manish Kumar et al.
BMC BIOINFORMATICS (2007)
WoLF PSORT: protein localization predictor
Paul Horton et al.
NUCLEIC ACIDS RESEARCH (2007)
Transcriptional profiling of Arabidopsis heat shock proteins and transcription factors reveals extensive overlap between heat and non-heat stress response pathways
William R. Swindell et al.
BMC GENOMICS (2007)
Predicting protein function by machine learning on amino acid sequences - a critical evaluation
Ali Al-Shahib et al.
BMC GENOMICS (2007)
The evolution of gene regulation by transcription factors and microRNAs
Kevin Chen et al.
NATURE REVIEWS GENETICS (2007)
Protein families and RNA recognition
Y Chen et al.
FEBS JOURNAL (2005)
Role of plant heat-shock proteins and molecular chaperones in the abiotic stress response
WX Wang et al.
TRENDS IN PLANT SCIENCE (2004)
Zinc finger proteins: new insights into structural and functional diversity
JH Laity et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2001)
Arabidopsis transcription factors:: Genome-wide comparative analysis among eukaryotes
JL Riechmann et al.
SCIENCE (2000)
The language of covalent histone modifications
BD Strahl et al.
NATURE (2000)