4.8 Article

Identifying core gene modules in glioblastoma based on multilayer factor-mediated dysfunctional regulatory networks through integrating multi-dimensional genomic data

Related references

Note: Only part of the references are listed.
Review Oncology

Principles and methods of integrative genomic analyses in cancer

Vessela N. Kristensen et al.

NATURE REVIEWS CANCER (2014)

Review Medicine, Research & Experimental

Glioblastoma: Molecular Analysis and Clinical Implications

Jason T. Huse et al.

ANNUAL REVIEW OF MEDICINE, VOL 64 (2013)

Article Biochemistry & Molecular Biology

P38 MAPK Contributes to Resistance and Invasiveness of HER2- Overexpressing Breast Cancer

S.M. Donnelly et al.

CURRENT MEDICINAL CHEMISTRY (2013)

Review Cell Biology

Aneuploidy in health, disease, and aging

Robin M. Ricke et al.

JOURNAL OF CELL BIOLOGY (2013)

Review Cell Biology

RB1 in cancer: Different mechanisms of RB1 inactivation and alterations of pRb pathway in tumorigenesis

Riccardo Di Fiore et al.

JOURNAL OF CELLULAR PHYSIOLOGY (2013)

Article Biochemistry & Molecular Biology

STAT1 Gene Expression Is Enhanced by Nuclear EGFR and HER2 via Cooperation With STAT3

Woody Han et al.

MOLECULAR CARCINOGENESIS (2013)

Article Biochemistry & Molecular Biology

Perturbation of the mutated EGFR interactome identifies vulnerabilities and resistance mechanisms

Jiannong Li et al.

MOLECULAR SYSTEMS BIOLOGY (2013)

Article Multidisciplinary Sciences

Integrated genomic characterization of endometrial carcinoma

Gad Getz et al.

NATURE (2013)

Review Multidisciplinary Sciences

Cancer Genome Landscapes

Bert Vogelstein et al.

SCIENCE (2013)

Article Biochemical Research Methods

Simultaneous Identification of Multiple Driver Pathways in Cancer

Mark D. M. Leiserson et al.

PLOS COMPUTATIONAL BIOLOGY (2013)

Article Biochemical Research Methods

Identifying multi-layer gene regulatory modules from multi-dimensional genomic data

Wenyuan Li et al.

BIOINFORMATICS (2012)

Review Oncology

Cancer Genetics and Epigenetics: Two Sides of the Same Coin?

Jueng Soo You et al.

CANCER CELL (2012)

Article Biochemistry & Molecular Biology

De novo discovery of mutated driver pathways in cancer

Fabio Vandin et al.

GENOME RESEARCH (2012)

Article Biochemistry & Molecular Biology

Mutual exclusivity analysis identifies oncogenic network modules

Giovanni Ciriello et al.

GENOME RESEARCH (2012)

Article Biochemistry & Molecular Biology

Inferring transcriptional and microRNA-mediated regulatory programs in glioblastoma

Manu Setty et al.

MOLECULAR SYSTEMS BIOLOGY (2012)

Article Multidisciplinary Sciences

Comprehensive molecular portraits of human breast tumours

Daniel C. Koboldt et al.

NATURE (2012)

Article Biochemistry & Molecular Biology

Prioritizing cancer-related key miRNA-target interactions by integrative genomics

Yun Xiao et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Multidisciplinary Sciences

Cell Cycle Gene Networks Are Associated with Melanoma Prognosis

Li Wang et al.

PLOS ONE (2012)

Article Oncology

Driver Mutations in Melanoma: Lessons Learned From Bench-to-Bedside Studies

Janice M. Mehnert et al.

CURRENT ONCOLOGY REPORTS (2012)

Article Biotechnology & Applied Microbiology

DriverNet: uncovering the impact of somatic driver mutations on transcriptional networks in cancer

Ali Bashashati et al.

GENOME BIOLOGY (2012)

Article Biochemical Research Methods

Identifying cancer driver genes in tumor genome sequencing studies

Ahrim Youn et al.

BIOINFORMATICS (2011)

Article Biochemistry & Molecular Biology

Network modeling of the transcriptional effects of copy number aberrations in glioblastoma

Rebecka Jornsten et al.

MOLECULAR SYSTEMS BIOLOGY (2011)

Article Multidisciplinary Sciences

Integrated genomic analyses of ovarian carcinoma

D. Bell et al.

NATURE (2011)

Article Biochemical Research Methods

Identifying Causal Genes and Dysregulated Pathways in Complex Diseases

Yoo-Ah Kim et al.

PLOS COMPUTATIONAL BIOLOGY (2011)

Article Biochemical Research Methods

Detecting disease associated modules and prioritizing active genes based on high throughput data

Yu-Qing Qiu et al.

BMC BIOINFORMATICS (2010)

Article Biochemistry & Molecular Biology

An Integrated Approach to Uncover Drivers of Cancer

Uri David Akavia et al.

Article Multidisciplinary Sciences

Mammalian microRNAs predominantly act to decrease target mRNA levels

Huili Guo et al.

NATURE (2010)

Review Clinical Neurology

MGMT promoter methylation in malignant gliomas: ready for personalized medicine?

Michael Weller et al.

NATURE REVIEWS NEUROLOGY (2010)

Article Biochemical Research Methods

Identification of Networks of Co-Occurring, Tumor-Related DNA Copy Number Changes Using a Genome-Wide Scoring Approach

Christiaan Klijn et al.

PLOS COMPUTATIONAL BIOLOGY (2010)

Article Medicine, General & Internal

A Network Model of a Cooperative Genetic Landscape in Brain Tumors

Markus Bredel et al.

JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION (2009)

Article Biochemistry & Molecular Biology

Human Protein Reference Database-2009 update

T. S. Keshava Prasad et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Biochemistry & Molecular Biology

miRecords: an integrated resource for microRNA-target interactions

Feifei Xiao et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Biochemistry & Molecular Biology

DNA amplification is a ubiquitous mechanism of oncogene activation in lung and other cancers

W. W. Lockwood et al.

ONCOGENE (2008)

Article Multidisciplinary Sciences

Assessing the significance of chromosomal aberrations in cancer: Methodology and application to glioma

Rameen Beroukhim et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Review Pathology

Genetic pathways to primary and secondary glioblastoma

Hiroko Ohgaki et al.

AMERICAN JOURNAL OF PATHOLOGY (2007)

Article Biochemical Research Methods

Global topological features of cancer proteins in the human interactome

Pall F. Jonsson et al.

BIOINFORMATICS (2006)

Article Biochemistry & Molecular Biology

p38 MAP kinase: a convergence point in cancer therapy

JM Olson et al.

TRENDS IN MOLECULAR MEDICINE (2004)

Review Oncology

A census of human cancer genes

PA Futreal et al.

NATURE REVIEWS CANCER (2004)

Review Biochemistry & Molecular Biology

Genetic alteration and gene expression modulation during cancer progression

Cathie Garnis et al.

MOLECULAR CANCER (2004)

Letter Genetics & Heredity

The Genetic Association Database

KG Becker et al.

NATURE GENETICS (2004)

Article Oncology

Distinct methylation profiles of glioma subtypes

K Uhlmann et al.

INTERNATIONAL JOURNAL OF CANCER (2003)

Article Biochemistry & Molecular Biology

TRANSFAC: an integrated system for gene expression regulation

E Wingender et al.

NUCLEIC ACIDS RESEARCH (2000)