4.7 Article

A fast multipole method for the Rotne-Prager-Yamakawa tensor and its applications

Journal

JOURNAL OF COMPUTATIONAL PHYSICS
Volume 234, Issue -, Pages 133-139

Publisher

ACADEMIC PRESS INC ELSEVIER SCIENCE
DOI: 10.1016/j.jcp.2012.09.021

Keywords

Square root matrix; Fast multipole method; Brownian dynamics; Hydrodynamic interaction; Lanzcos iteration; Krylov subspace approximation; Rotne-Prager-Yamakawa tensor

Funding

  1. NSF [CCF-0905395, CCF-0905473]
  2. Department of Energy [DEFG0288-ER-25053]
  3. National Science Foundation [DMS-0934733]
  4. Direct For Computer & Info Scie & Enginr
  5. Division of Computing and Communication Foundations [0905395] Funding Source: National Science Foundation
  6. Division of Computing and Communication Foundations
  7. Direct For Computer & Info Scie & Enginr [0905473] Funding Source: National Science Foundation
  8. Division Of Mathematical Sciences
  9. Direct For Mathematical & Physical Scien [0854961] Funding Source: National Science Foundation

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We present a fast multipole method (FMM) for computing sums involving the Rotne-Prager-Yamakawa tensor. The method, similar to the approach in Tornberg and Greengard (2008) [26] for the Stokeslet, decomposes the tensor vector product into a sum of harmonic potentials and fields induced by four different charge and dipole distributions. Unlike the approach based on the kernel independent fast multipole method (Ying et al., 2004) [31], which requires nine scalar FMM calls, the method presented here requires only four. We discuss its applications to Brownian dynamics simulation with hydrodynamic interactions, and present some timing results. (C) 2012 Elsevier Inc. All rights reserved.

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