Related references
Note: Only part of the references are listed.Real-Time Whole-Genome Sequencing for Routine Typing, Surveillance, and Outbreak Detection of Verotoxigenic Escherichia coli
Katrine Grimstrup Joensen et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2014)
Genomic Epidemiology of Salmonella enterica Serotype Enteritidis based on Population Structure of Prevalent Lineages
Xiangyu Deng et al.
EMERGING INFECTIOUS DISEASES (2014)
CRISPR-MVLST subtyping of Salmonella enterica subsp enterica serovars Typhimurium and Heidelberg and application in identifying outbreak isolates
Nikki Shariat et al.
BMC MICROBIOLOGY (2013)
The combination of CRISPR-MVLST and PFGE provides increased discriminatory power for differentiating human clinical isolates of Salmonella enterica subsp enterica serovar Enteritidis
Nikki Shariat et al.
FOOD MICROBIOLOGY (2013)
Phylogenetic Diversity of the Enteric Pathogen Salmonella enterica subsp enterica Inferred from Genome-Wide Reference-Free SNP Characters
Ruth E. Timme et al.
GENOME BIOLOGY AND EVOLUTION (2013)
Subtyping of Salmonella enterica Serovar Newport Outbreak Isolates by CRISPR-MVLST and Determination of the Relationship between CRISPR-MVLST and PFGE Results
Nikki Shariat et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2013)
Updating benchtop sequencing performance comparison
Sebastian Juenemann et al.
NATURE BIOTECHNOLOGY (2013)
On the Evolutionary History, Population Genetics and Diversity among Isolates of Salmonella Enteritidis PFGE Pattern JEGX01.0004
Marc W. Allard et al.
PLOS ONE (2013)
Outbreak-associated Salmonella enterica Serotypes and Food Commodities, United States, 1998-2008
Brendan R. Jackson et al.
EMERGING INFECTIOUS DISEASES (2013)
Short read sequence typing (SRST): multi-locus sequence types from short reads
Michael Inouye et al.
BMC GENOMICS (2012)
Molecular Characterization of Salmonella Enteritidis: Comparison of an Optimized Multi-Locus Variable-Number of Tandem Repeat Analysis (MLVA) and Pulsed-Field Gel Electrophoresis
Isabelle Dewaele et al.
FOODBORNE PATHOGENS AND DISEASE (2012)
Multilocus Sequence Typing of Total-Genome-Sequenced Bacteria
Mette V. Larsen et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2012)
Performance comparison of benchtop high-throughput sequencing platforms
Nicholas J. Loman et al.
NATURE BIOTECHNOLOGY (2012)
Whole Genome Sequence Typing to Investigate the Apophysomyces Outbreak following a Tornado in Joplin, Missouri, 2011
Kizee A. Etienne et al.
PLOS ONE (2012)
A Whole-Genome Single Nucleotide Polymorphism-Based Approach To Trace and Identify Outbreaks Linked to a Common Salmonella enterica subsp enterica Serovar Montevideo Pulsed-Field Gel Electrophoresis Type
Henk C. den Bakker et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2011)
Novel Virulence Gene and Clustered Regularly Interspaced Short Palindromic Repeat (CRISPR) Multilocus Sequence Typing Scheme for Subtyping of the Major Serovars of Salmonella enterica subsp enterica
Fenyun Liu et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2011)
Subtyping Salmonella enterica Serovar Enteritidis Isolates from Different Sources by Using Sequence Typing Based on Virulence Genes and Clustered Regularly Interspaced Short Palindromic Repeats (CRISPRs)
Fenyun Liu et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2011)
MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods
Koichiro Tamura et al.
MOLECULAR BIOLOGY AND EVOLUTION (2011)
Identification of a Salmonellosis Outbreak by Means of Molecular Sequencing
E. Kurt Lienau et al.
NEW ENGLAND JOURNAL OF MEDICINE (2011)
The Origin of the Haitian Cholera Outbreak Strain.
Chen-Shan Chin et al.
NEW ENGLAND JOURNAL OF MEDICINE (2011)
Origins of the E. coli Strain Causing an Outbreak of Hemolytic-Uremic Syndrome in Germany
David A. Rasko et al.
NEW ENGLAND JOURNAL OF MEDICINE (2011)
Prospective Genomic Characterization of the German Enterohemorrhagic Escherichia coli O104:H4 Outbreak by Rapid Next Generation Sequencing Technology
Alexander Mellmann et al.
PLOS ONE (2011)
Whole Genome Sequence Analysis of Cryptococcus gattii from the Pacific Northwest Reveals Unexpected Diversity
John D. Gillece et al.
PLOS ONE (2011)
Population Genetics of Vibrio cholerae from Nepal in 2010: Evidence on the Origin of the Haitian Outbreak
Rene S. Hendriksen et al.
MBIO (2011)
Next-Generation Sequencing of Coccidioides immitis Isolated during Cluster Investigation
David M. Engelthaler et al.
EMERGING INFECTIOUS DISEASES (2011)
Foodborne Illness Acquired in the United States-Major Pathogens
Elaine Scallan et al.
EMERGING INFECTIOUS DISEASES (2011)
Evolution of MRSA During Hospital Transmission and Intercontinental Spread
Simon R. Harris et al.
SCIENCE (2010)
A bacterial metapopulation adapts locally to phage predation despite global dispersal
Victor Kunin et al.
GENOME RESEARCH (2008)
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
Daniel R. Zerbino et al.
GENOME RESEARCH (2008)
Enhanced Subtyping scheme for Salmonella enteritidis
Jie Zheng et al.
EMERGING INFECTIOUS DISEASES (2007)
Limited genetic diversity in Salmonella enterica Serovar Enteritidis PT13
Adam B. Olson et al.
BMC MICROBIOLOGY (2007)
Multiple-locus variable-number tandem repeat analysis of Salmonella Enteritidis isolates from human and non-human sources using a single multiplex PCR
Seongbeom Cho et al.
FEMS MICROBIOLOGY LETTERS (2007)
Comparison of multiple-locus variable-number tandem repeat analysis, pulsed-field gel electrophoresis, and phage typing for subtype analysis of Salmonella enterica serotype enteritidis
D. Boxrud et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2007)
Comparison of subtyping methods for differentiating Salmonella enterica serovar Typhimurium isolates obtained from food animal sources
Steven L. Foley et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2006)
Standardization of pulsed-field gel electrophoresis protocols for the subtyping of Escherichia coli O157:H7 Salmonella, and Shigella for PulseNet
Efrain M. Ribot et al.
FOODBORNE PATHOGENS AND DISEASE (2006)
Application of phylogenetic networks in evolutionary studies
DH Huson et al.
MOLECULAR BIOLOGY AND EVOLUTION (2006)