4.7 Article

Adaptive Resolution Simulation of MARTINI Solvents

Journal

JOURNAL OF CHEMICAL THEORY AND COMPUTATION
Volume 10, Issue 6, Pages 2591-2598

Publisher

AMER CHEMICAL SOC
DOI: 10.1021/ct5001523

Keywords

-

Funding

  1. National Science Foundation [NSF PHY11-25915]
  2. Slovenian Research Agency [J1-4134, P1-0002]
  3. Netherlands Organization for Scientific Research (NWO) [722.013.010]

Ask authors/readers for more resources

We present adaptive resolution dynamics simulations of aqueous and apolar solvents coarse-grained molecular models that are compatible with the MARTINI force field. As representatives of both classes solvents we have chosen liquid water and butane, respectively, at ambient temperature. The solvent molecules change their resolution back and forth between the atomistic and coarse-grained representations according to their positions in the system. The difficulties that arise from coupling to a coarse-grained model with a multimolecule mapping, for example, 4-to-1 mapping in the case of the Simple Point Charge (SPC) and MARTINI water models, could be successfully circumvented by using bundled water models. We demonstrate that the presented multiscale approach faithfully reproduces the structural and dynamical properties computed by reference fully atomistic molecular dynamics simulations. Our approach is general and can be used with any atomistic force field to be linked with the MARTINI force field.

Authors

I am an author on this paper
Click your name to claim this paper and add it to your profile.

Reviews

Primary Rating

4.7
Not enough ratings

Secondary Ratings

Novelty
-
Significance
-
Scientific rigor
-
Rate this paper

Recommended

No Data Available
No Data Available