4.7 Article

Computationally Efficient Multiconfigurational Reactive Molecular Dynamics

Journal

JOURNAL OF CHEMICAL THEORY AND COMPUTATION
Volume 8, Issue 12, Pages 4863-4875

Publisher

AMER CHEMICAL SOC
DOI: 10.1021/ct3006437

Keywords

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Funding

  1. National Science Foundation (NSF) [CHE-1214087, 1053575]
  2. Japan Society for the Promotion of Science (JSPS)
  3. U.S. Department of Energy [DE-AC02-06CH11357]
  4. Argonne National Laboratory Computational Science Postdoctoral Fellowship
  5. DOD High Performance Computing Modernization Program at the Engineer Research and Development Center (ERDC) DoD, Supercomputing Resource Center
  6. Office of Science of the U.S. Department of Energy [DE-AC02-06CH11357]
  7. National Institutes of Health (NIH) [R01-GM053148]
  8. Innovative and Novel Computational Impact on Theory and Experiment (INCITE) program
  9. Direct For Mathematical & Physical Scien
  10. Division Of Chemistry [1214087] Funding Source: National Science Foundation

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It is a computationally demanding task to explicitly simulate the electronic degrees of freedom in a system to observe the chemical transformations of interest, while at the same time sampling the time and length scales required to converge statistical properties and thus reduce artifacts due to initial conditions, finite-size effects, and limited sampling. One solution that significantly reduces the computational expense consists of molecular models in which effective interactions between particles govern the dynamics of the system. If the interaction potentials in these models are developed to reproduce calculated properties from electronic structure calculations and/or ab initio molecular dynamics simulations, then one can calculate accurate properties at a fraction of the computational cost. Multiconfigurational algorithms model the system as a linear combination of several chemical bonding topologies to simulate chemical reactions, also sometimes referred to as multistate. These algorithms typically utilize energy and force calculations already found in popular molecular dynamics software packages, thus facilitating their implementation without significant changes to the structure of the code. However, the evaluation of energies and forces for several bonding topologies per simulation step can lead to poor computational efficiency if redundancy is not efficiently removed, particularly with respect to the calculation of long-ranged Coulombic interactions. This paper presents accurate approximations (effective long-range interaction and resulting hybrid methods) and multiple-program parallelization strategies for the efficient calculation of electrostatic interactions in reactive molecular simulations.

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