4.7 Article

Fast-SAXS-pro: A unified approach to computing SAXS profiles of DNA, RNA, protein, and their complexes

Related references

Note: Only part of the references are listed.
Article Computer Science, Interdisciplinary Applications

SASSIE: A program to study intrinsically disordered biological molecules and macromolecular ensembles using experimental scattering restraints

Joseph E. Curtis et al.

COMPUTER PHYSICS COMMUNICATIONS (2012)

Article Biochemistry & Molecular Biology

Advances in X-ray scattering: from solution SAXS to achievements with coherent beams

Javier Perez et al.

CURRENT OPINION IN STRUCTURAL BIOLOGY (2012)

Review Biochemistry & Molecular Biology

How Random are Intrinsically Disordered Proteins? A Small Angle Scattering Perspective

Veronique Receveur-Brechot et al.

CURRENT PROTEIN & PEPTIDE SCIENCE (2012)

Review Biophysics

Integrative structural modeling with small angle X-ray scattering profiles

Dina Schneidman-Duhovny et al.

BMC STRUCTURAL BIOLOGY (2012)

Article Chemistry, Physical

Effects of ionic strength on SAXS data for proteins revealed by molecular dynamics simulations

Tomotaka Oroguchi et al.

JOURNAL OF CHEMICAL PHYSICS (2011)

Article Biochemistry & Molecular Biology

Structure modeling from small angle X-ray scattering data with elastic network normal mode analysis

Osamu Miyashita et al.

JOURNAL OF STRUCTURAL BIOLOGY (2011)

Article Biochemistry & Molecular Biology

AquaSAXS: a web server for computation and fitting of SAXS profiles with non-uniformally hydrated atomic models

Frederic Poitevin et al.

NUCLEIC ACIDS RESEARCH (2011)

Editorial Material Biochemistry & Molecular Biology

EROS: Better than SAXS!

Sichun Yang et al.

STRUCTURE (2011)

Article Biochemistry & Molecular Biology

SAXS Ensemble Refinement of ESCRT-III CHMP3 Conformational Transitions

Bartosz Rozycki et al.

STRUCTURE (2011)

Article Biochemical Research Methods

Calculation of accurate small angle X-ray scattering curves from coarse-grained protein models

Kasper Stovgaard et al.

BMC BIOINFORMATICS (2010)

Article Chemistry, Physical

RNA Structure Determination Using SAXS Data

Sichun Yang et al.

JOURNAL OF PHYSICAL CHEMISTRY B (2010)

Article Chemistry, Multidisciplinary

Improved Fitting of Solution X-ray Scattering Data to Macromolecular Structures and Structural Ensembles by Explicit Water Modeling

Alexander Grishaev et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2010)

Editorial Material Multidisciplinary Sciences

STRUCTURAL BIOLOGY Proteins in dynamic equilibrium

Pau Bernado et al.

NATURE (2010)

Article Biochemistry & Molecular Biology

FoXS: a web server for rapid computation and fitting of SAXS profiles

Dina Schneidman-Duhovny et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Multidisciplinary Sciences

Multidomain assembled states of Hck tyrosine kinase in solution

Sichun Yang et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Biochemistry & Molecular Biology

Structure and flexibility within proteins as identified through small angle X-ray scattering

Martin Pelikan et al.

GENERAL PHYSIOLOGY AND BIOPHYSICS (2009)

Article Chemistry, Physical

Simulated x-ray scattering of protein solutions using explicit-solvent models

Sanghyun Park et al.

JOURNAL OF CHEMICAL PHYSICS (2009)

Article Chemistry, Multidisciplinary

Quantitative Modelfree Analysis of Urea Binding to Unfolded Ubiquitin Using a Combination of Small Angle X-ray and Neutron Scattering

Frank Gabel et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2009)

Article Biochemistry & Molecular Biology

Solution structure of tRNAVal from refinement of homology model against residual dipolar coupling and SAXS data

Alexander Grishaev et al.

JOURNAL OF BIOMOLECULAR NMR (2008)

Article Biochemistry & Molecular Biology

Integration of small-angle X-ray scattering data into structural modeling of proteins and their assemblies

Friedrich Foerster et al.

JOURNAL OF MOLECULAR BIOLOGY (2008)

Article Physics, Multidisciplinary

Inter-DNA attraction mediated by divalent counterions

Xiangyun Qiu et al.

PHYSICAL REVIEW LETTERS (2007)

Article Chemistry, Multidisciplinary

Structural characterization of flexible proteins using small-angle X-ray scattering

Pau Bernado et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2007)

Article Physics, Multidisciplinary

Measuring inter-DNA potentials in solution

XY Qiu et al.

PHYSICAL REVIEW LETTERS (2006)

Article Biochemistry & Molecular Biology

Crystal structure of ATF-2/c-Jun and IRF-3 bound to the interferon-β enhancer

D Panne et al.

EMBO JOURNAL (2004)

Review Biochemistry & Molecular Biology

Simulation and modeling of nucleic acid structure, dynamics and interactions

TE Cheatham

CURRENT OPINION IN STRUCTURAL BIOLOGY (2004)

Review Chemistry, Multidisciplinary

Solvation and hydration of proteins and mucleic acids: A theoretical view of simulation and experiment

V Makarov et al.

ACCOUNTS OF CHEMICAL RESEARCH (2002)

Article Biophysics

Determination of domain structure of proteins from X-ray solution scattering

DI Svergun et al.

BIOPHYSICAL JOURNAL (2001)

Review Chemistry, Multidisciplinary

Changes in biomolecular conformation seen by small angle X-ray scattering

S Doniach

CHEMICAL REVIEWS (2001)

Review Chemistry, Multidisciplinary

Small-angle X-ray scattering of polymers

B Chu et al.

CHEMICAL REVIEWS (2001)

Review Biochemistry & Molecular Biology

Water and ion binding around r(UpA)12 and d(TpA)12 oligomers -: Comparison with RNA and DNA (CpG)12 duplexes

P Auffinger et al.

JOURNAL OF MOLECULAR BIOLOGY (2001)

Review Biochemistry & Molecular Biology

Water and ion binding around RNA and DNA (C,G) oligomers

P Auffinger et al.

JOURNAL OF MOLECULAR BIOLOGY (2000)