Related references
Note: Only part of the references are listed.Early Events in Helix Unfolding under External Forces: A Milestoning Analysis
Steven M. Kreuzer et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2012)
Unassisted Transport of N-Acetyl-L-tryptophanamide through Membrane: Experiment and Simulation of Kinetics
Alfredo E. Cardenas et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2012)
Experiments and Comprehensive Simulations of the Formation of a Helical Turn
Gouri S. Jas et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2012)
Transition Path Times for Nucleic Acid Folding Determined from Energy-Landscape Analysis of Single-Molecule Trajectories
Krishna Neupane et al.
PHYSICAL REVIEW LETTERS (2012)
Single-Molecule Fluorescence Experiments Determine Protein Folding Transition Path Times
Hoi Sung Chung et al.
SCIENCE (2012)
How Conformational Dynamics of DNA Polymerase Select Correct Substrates: Experiments and Simulations
Serdal Kirmizialtin et al.
STRUCTURE (2012)
Milestoning with transition memory
Alexander T. Hawk et al.
JOURNAL OF CHEMICAL PHYSICS (2011)
Polymer reversal rate calculated via locally scaled diffusion map
Wenwei Zheng et al.
JOURNAL OF CHEMICAL PHYSICS (2011)
Markov state models based on milestoning
Christof Schuette et al.
JOURNAL OF CHEMICAL PHYSICS (2011)
Markov models of molecular kinetics: Generation and validation
Jan-Hendrik Prinz et al.
JOURNAL OF CHEMICAL PHYSICS (2011)
Flow-Dependent Unfolding and Refolding of an RNA by Nonequilibrium Umbrella Sampling
Alex Dickson et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2011)
Revisiting and Computing Reaction Coordinates with Directional Milestoning
Serdal Kirmizialtin et al.
JOURNAL OF PHYSICAL CHEMISTRY A (2011)
A harmonic transition state approximation for the duration of reactive events in complex molecular rearrangements
Srabanti Chaudhury et al.
JOURNAL OF CHEMICAL PHYSICS (2010)
Milestoning without a Reaction Coordinate
Peter Majek et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2010)
ON THE APPROXIMATION QUALITY OF MARKOV STATE MODELS
Marco Sarich et al.
MULTISCALE MODELING & SIMULATION (2010)
Atomically detailed simulation of the recovery stroke in myosin by Milestoning
Ron Elber et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Nonequilibrium umbrella sampling in spaces of many order parameters
Alex Dickson et al.
JOURNAL OF CHEMICAL PHYSICS (2009)
Revisiting the finite temperature string method for the calculation of reaction tubes and free energies
Eric Vanden-Eijnden et al.
JOURNAL OF CHEMICAL PHYSICS (2009)
Markovian milestoning with Voronoi tessellations
Eric Vanden-Eijnden et al.
JOURNAL OF CHEMICAL PHYSICS (2009)
Exact rate calculations by trajectory parallelization and tilting
Eric Vanden-Eijnden et al.
JOURNAL OF CHEMICAL PHYSICS (2009)
Separating forward and backward pathways in nonequilibrium umbrella sampling
Alex Dickson et al.
JOURNAL OF CHEMICAL PHYSICS (2009)
Experimental determination of upper bound for transition path times in protein folding from single-molecule photon-by-photon trajectories
Hoi Sung Chung et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
The rate constant of polymer reversal inside a pore
Lei Huang et al.
JOURNAL OF CHEMICAL PHYSICS (2008)
On the assumptions underlying milestoning
Eric Vanden-Eijnden et al.
JOURNAL OF CHEMICAL PHYSICS (2008)
Coarse master equations for peptide folding dynamics
Nicolae-Viorel Buchete et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2008)
Umbrella sampling for nonequilibrium processes
Aryeh Warmflash et al.
JOURNAL OF CHEMICAL PHYSICS (2007)
On-the-fly string method for minimum free energy paths calculation
Luca Maragliano et al.
CHEMICAL PHYSICS LETTERS (2007)
Computing stationary distributions in equilibrium and nonequilibrium systems with forward flux sampling
Chantal Valeriani et al.
JOURNAL OF CHEMICAL PHYSICS (2007)
Calculation of the distribution of eigenvalues and eigenvectors in Markovian state models for molecular dynamics
Nina Singhal Hinrichs et al.
JOURNAL OF CHEMICAL PHYSICS (2007)
Extending molecular dynamics time scales with milestoning: Example of complex kinetics in a solvated peptide
Anthony M. A. West et al.
JOURNAL OF CHEMICAL PHYSICS (2007)
String method in collective variables: Minimum free energy paths and isocommittor surfaces
Luca Maragliano et al.
JOURNAL OF CHEMICAL PHYSICS (2006)
Forward flux sampling-type schemes for simulating rare events: Efficiency analysis
Rosalind J. Allen et al.
JOURNAL OF CHEMICAL PHYSICS (2006)
Simulating rare events in equilibrium or nonequilibrium stochastic systems
RJ Allen et al.
JOURNAL OF CHEMICAL PHYSICS (2006)
Finite temperature string method for the study of rare events
E Weinan et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2005)
Rate constants for diffusive processes by partial path sampling
D Moroni et al.
JOURNAL OF CHEMICAL PHYSICS (2004)
From transition paths to transition states and rate coefficients
G Hummer
JOURNAL OF CHEMICAL PHYSICS (2004)
Investigating rare events by transition interface sampling
D Moroni et al.
PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS (2004)
Computing time scales from reaction coordinates by milestoning
AK Faradjian et al.
JOURNAL OF CHEMICAL PHYSICS (2004)
A novel path sampling method for the calculation of rate constants
TS van Erp et al.
JOURNAL OF CHEMICAL PHYSICS (2003)