4.7 Article

A parameter-free, solid-angle based, nearest-neighbor algorithm

Journal

JOURNAL OF CHEMICAL PHYSICS
Volume 136, Issue 23, Pages -

Publisher

AMER INST PHYSICS
DOI: 10.1063/1.4729313

Keywords

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Funding

  1. Netherlands Organization for Scientific Research (NWO)
  2. Royal Society of London
  3. ERC [227758]
  4. Individual Marie Curie Fellowship (in Edinburgh)
  5. Juan de la Cierva Fellowship (in Madrid)
  6. EPSRC, UK [EP/I001352/1]
  7. European Research Council (ERC) [227758] Funding Source: European Research Council (ERC)
  8. Engineering and Physical Sciences Research Council [EP/I001352/1] Funding Source: researchfish
  9. EPSRC [EP/I001352/1] Funding Source: UKRI

Ask authors/readers for more resources

We propose a parameter-free algorithm for the identification of nearest neighbors. The algorithm is very easy to use and has a number of advantages over existing algorithms to identify nearest-neighbors. This solid-angle based nearest-neighbor algorithm (SANN) attributes to each possible neighbor a solid angle and determines the cutoff radius by the requirement that the sum of the solid angles is 4 pi. The algorithm can be used to analyze 3D images, both from experiments as well as theory, and as the algorithm has a low computational cost, it can also be used on the fly in simulations. In this paper, we describe the SANN algorithm, discuss its properties, and compare it to both a fixed-distance cutoff algorithm and to a Voronoi construction by analyzing its behavior in bulk phases of systems of carbon atoms, Lennard-Jones particles and hard spheres as well as in Lennard-Jones systems with liquid-crystal and liquid-vapor interfaces. (C) 2012 American Institute of Physics. [http://dx.doi.org/10.1063/1.4729313]

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