Multiple state transition interface sampling of alanine dipeptide in explicit solvent

We have applied the recently developed multiple state transition interface sampling approach to alanine dipeptide in explicit water. We extract the rate constant matrix for configurational changes between each pair of metastable states. The results are comparable with values from previous literature and show that the method is applicable to biomolecular systems. (C) 2011 American Institute of Physics. [doi:10.1063/1.3644344]