4.3 Article

The Scalable Brain Atlas: Instant Web-Based Access to Public Brain Atlases and Related Content

Journal

NEUROINFORMATICS
Volume 13, Issue 3, Pages 353-366

Publisher

HUMANA PRESS INC
DOI: 10.1007/s12021-014-9258-x

Keywords

Online Brain Atlas; Comparative anatomy; Macaque; Mouse; Rat; Human; Marmoset; Scalable vector graphics; Structural connectivity; Fiducial points

Funding

  1. International Neuroinformatics Coordinating Facility (INCF)
  2. Donders Institute for Brain, Cognition and Behaviour of the Radboud University
  3. UMC Nijmegen
  4. German INCF Node (BMBF) [01GQ0801]
  5. Helmholtz Association HASB
  6. portfolio theme SMHB
  7. JUGENE [JINB33]
  8. EU [269921]
  9. INCF
  10. European Union [604102]
  11. Netherlands eSciene Center [027.011.304]

Ask authors/readers for more resources

The Scalable Brain Atlas (SBA) is a collection of web services that provide unified access to a large collection of brain atlas templates for different species. Its main component is an atlas viewer that displays brain atlas data as a stack of slices in which stereotaxic coordinates and brain regions can be selected. These are subsequently used to launch web queries to resources that require coordinates or region names as input. It supports plugins which run inside the viewer and respond when a new slice, coordinate or region is selected. It contains 20 atlas templates in six species, and plugins to compute coordinate transformations, display anatomical connectivity and fiducial points, and retrieve properties, descriptions, definitions and 3d reconstructions of brain regions. The ambition of SBA is to provide a unified representation of all publicly available brain atlases directly in the web browser, while remaining a responsive and light weight resource that specializes in atlas comparisons, searches, coordinate transformations and interactive displays.

Authors

I am an author on this paper
Click your name to claim this paper and add it to your profile.

Reviews

Primary Rating

4.3
Not enough ratings

Secondary Ratings

Novelty
-
Significance
-
Scientific rigor
-
Rate this paper

Recommended

No Data Available
No Data Available