4.7 Article

The Possible Structural Models for Polyglutamine Aggregation: A Molecular Dynamics Simulations Study

Related references

Note: Only part of the references are listed.
Article Biophysics

Reconstructing Potentials of Mean Force from Short Steered Molecular Dynamics Simulations of Vpu from HIV-1

George Patargias et al.

JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS (2012)

Article Biochemistry & Molecular Biology

Molecular Dynamics Studies on Troponin (TnI-TnT-TnC) Complexes: Insight into the Regulation of Muscle Contraction

Jayson F. Varughese et al.

JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS (2010)

Article Biochemistry & Molecular Biology

A Comparative Study of Two Different Force Fields on Structural and Thermodynamics Character of H1 Peptide via Molecular Dynamics Simulations

Zanxia Cao et al.

JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS (2010)

Article Biochemistry & Molecular Biology

The Importance of Steric Zipper on the Aggregation of the MVGGVV Peptide Derived from the Amyloid β Peptide

Liang-Kai Chang et al.

JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS (2010)

Article Biochemistry & Molecular Biology

100 ns Molecular Dynamics Simulations to Study Intramolecular Conformational Changes in Bax

Caroline Koshy et al.

JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS (2010)

Article Biochemistry & Molecular Biology

Conformational Analysis of Genotoxic Benzo[a]pyrene-7,8-dione-Duplex DNA Adducts Using a Molecular Dynamics Method

Biao Jin et al.

JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS (2010)

Article Biochemistry & Molecular Biology

20ns Molecular Dynamics Simulation of the Antennapedia Homeodomain-DNA Complex: Water Interaction and DNA Structure Analysis

Sujata Roy et al.

JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS (2010)

Review Biochemistry & Molecular Biology

Binding Sites of the E. Coli DNA Recombinase Protein to the ssDNA: A Computational Study

Claudio Carra et al.

JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS (2010)

Article Biochemistry & Molecular Biology

In Silico Structural and Functional Analysis of Fragments of the Ankyrin Repeat Protein P18INK4c

Petr Sklenovsky et al.

JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS (2010)

Article Biochemistry & Molecular Biology

Predicting Atomic Details of the Unfolding Pathway for YibK, a Knotted Protein from the SPOUT Superfamily

Irina Tuszynska et al.

JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS (2010)

Article Biochemistry & Molecular Biology

A Theoretical Elucidation of Glucose Interaction with HSA's Domains

Rasoul Nasiri et al.

JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS (2010)

Article Biochemistry & Molecular Biology

Conformational Analysis of Genotoxic Benzo[a]pyrene-7,8-dione-Duplex DNA Adducts Using a Molecular Dynamics Method (II)

Hyun Mee Lee et al.

JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS (2010)

Article Biochemistry & Molecular Biology

Effects of pH and Temperature on the Structural and Thermodynamic Character of α-syn12 Peptide in Aqueous Solution

Zanxia Cao et al.

JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS (2010)

Article Biochemistry & Molecular Biology

Influence of the Acetylcholinesterase Active Site Protonation on Omega Loop and Active Site Dynamics

Jiri Wiesner et al.

JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS (2010)

Article Biochemistry & Molecular Biology

Exposure of Hydrophobic Core in Human Prion Protein Pathogenic Mutant H187R

Linghao Zhong

JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS (2010)

Article Biochemistry & Molecular Biology

Molecular Dynamics Simulations of Cyclohexyl Modified Peptide Nucleic Acids (PNA)

Smriti Sharma et al.

JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS (2010)

Article Biochemistry & Molecular Biology

Molecular Dynamics Simulation Study of the Interaction of Piscidin 1 with DPPC Bilayers: Structure-Activity Relationship

Faramarz Mehrnejad et al.

JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS (2010)

Article Biochemistry & Molecular Biology

Structural and Dynamic Properties of a new Amyloidogenic Chicken Cystatin Mutant 1108T

Yuanyuan Yu et al.

JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS (2010)

Article Biochemistry & Molecular Biology

Insight Derived from Molecular Dynamics Simulation into Substrate-Induced Changes in Protein Motions of Proteinase K

Yan Tao et al.

JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS (2010)

Article Biochemistry & Molecular Biology

Anti-Infectious Bronchitis Virus (IBV) Activity of 1,8-cineole: Effect on Nucleocapsid (N) Protein

Zhiwei Yang et al.

JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS (2010)

Article Biochemistry & Molecular Biology

Conformational and Oligomeric Effects on the Cysteine pKa of Tryparedoxin Peroxidase

Ye Yuan et al.

JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS (2010)

Article Biochemistry & Molecular Biology

RNA Stability Under Different Combinations of Amber Force Fields and Solvation Models

Zhou Gong et al.

JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS (2010)

Article Biochemistry & Molecular Biology

A Molecular Dynamics Study of Human Defensins HBD-1 and HNP-3 in Water

Ambure Sharadadevi et al.

JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS (2010)

Article Biochemistry & Molecular Biology

Molecular Dynamics Simulations to Gain Insights into the Stability and Morphologies off K3 Oligomers from β2-microglobulin

Po-Sheng Fang et al.

JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS (2009)

Article Biochemistry & Molecular Biology

Disruption Mechanism in the Helix of SPF Peptide by Interchanging E5 and K10 Residues: Inference from Molecular Dynamics Study

P. N. Sunilkumar et al.

JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS (2009)

Article Biochemistry & Molecular Biology

Effects of Disease Causing Mutations on the Essential Motions in Proteins

Malkaram S. Achary et al.

JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS (2009)

Article Biochemistry & Molecular Biology

Molecular Dynamics Simulations to Investigate the Structural Stability and Aggregation Behavior of the GGVVIA Oligomers Derived from Amyloid β Peptide

Liang-Kai Chang et al.

JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS (2009)

Article Biochemistry & Molecular Biology

Simulation Studies on the Stabilities of Aggregates Formed by Fibril-Forming Segments of alpha-Synuclein

Jeseong Yoon et al.

JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS (2009)

Article Biochemistry & Molecular Biology

Structural-Dynamical Properties of the Deinococcus Radiodurans Topoisomerase IB in Absence of DNA: Correlation with the Human Enzyme

Ilda D'Annessa et al.

JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS (2009)

Article Biochemistry & Molecular Biology

An Insight to the Dynamics of Conserved Water Molecular Triad in IMPDH II (Human): Recognition of Cofactor and Substrate to Catalytic Arg 322

Hridoy R. Bairagya et al.

JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS (2009)

Article Biochemistry & Molecular Biology

Structural Rearrangements of Rhodopsin Subunits in a Dimer Complex: a Molecular Dynamics Simulation Study

Arnau Cordomi et al.

JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS (2009)

Article Biochemistry & Molecular Biology

Studies on the Structural Stability of Rabbit Prion Probed by Molecular Dynamics Simulations

Jiapu Zhang

JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS (2009)

Article Biochemistry & Molecular Biology

Investigation of the Effect of Glycosylation on Human Prion Protein by Molecular Dynamics

Linghao Zhong et al.

JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS (2009)

Article Biochemistry & Molecular Biology

Molecular Dynamics Simulations to Investigate the Aggregation Behaviors of the Aβ(17-42) Oligomers

Jian-Hua Zhao et al.

JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS (2009)

Article Biochemistry & Molecular Biology

Examining Polyglutamine Peptide Length: A Connection between Collapsed Conformations and Increased Aggregation

Robert H. Walters et al.

JOURNAL OF MOLECULAR BIOLOGY (2009)

Article Biology

Molecular dynamics simulation study on the structural stabilities of polyglutamine peptides

Hajime Ogawa et al.

COMPUTATIONAL BIOLOGY AND CHEMISTRY (2008)

Article Chemistry, Physical

Folding of polyglutamine chains

Manan Chopra et al.

JOURNAL OF CHEMICAL PHYSICS (2008)

Article Chemistry, Physical

Structural Properties of Polyglutamine Aggregates Investigated via Molecular Dynamics Simulations

Giulia Rossetti et al.

JOURNAL OF PHYSICAL CHEMISTRY B (2008)

Article Biochemistry & Molecular Biology

Left handed β helix models for mammalian prion fibrils

Kay C. Kunes et al.

PRION (2008)

Article Biochemistry & Molecular Biology

Pathogenic and non-pathogenic polyglutamine tracts have similar structural properties: Towards a length-dependent toxicity gradient

Fabrice A. C. Klein et al.

JOURNAL OF MOLECULAR BIOLOGY (2007)

Article Biochemistry & Molecular Biology

De novo tubular nanostructure design based on self-assembly of β-helical protein motifs

Nurit Haspel et al.

STRUCTURE (2006)

Article Biochemistry & Molecular Biology

Polyglutamine repeats and β-helix structure:: Molecular dynamics study

Antonello Merlino et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2006)

Article Biochemistry & Molecular Biology

Extended polyglutamine tracts cause aggregation and structural perturbation of an adjacent β barrel protein

Z Ignatova et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2006)

Article Biochemistry & Molecular Biology

Computational study of the fibril organization of polyglutamine repeats reveals a common motif identified in β-helices

D Zanuy et al.

JOURNAL OF MOLECULAR BIOLOGY (2006)

Article Biochemistry & Molecular Biology

Conformational and sequence signatures in β helix proteins

P Iengar et al.

STRUCTURE (2006)

Meeting Abstract Chemistry, Multidisciplinary

A fluoroquinolone resistance protein from mycobacterium tuberculosis that mimics DNA

Subray S. Hegde et al.

ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY (2005)

Article Multidisciplinary Sciences

Structure of the cross-β spine of amyloid-like fibrils

R Nelson et al.

NATURE (2005)

Article Biochemistry & Molecular Biology

New model for crystalline polyglutamine assemblies and their connection with amyloid fibrils

P Sikorski et al.

BIOMACROMOLECULES (2005)

Article Multidisciplinary Sciences

The crystal structure of filamentous hemagglutinin secretion domain and its implications for the two-partner secretion pathway

B Clantin et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)

Article Biochemistry & Molecular Biology

β-Helix is a likely core structure of yeast prion Sup35 amyloid fibers

A Kishimoto et al.

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2004)

Article Biophysics

The stability and dynamics of the human calcitonin amyloid peptide DFNKF

HH Tsai et al.

BIOPHYSICAL JOURNAL (2004)

Article Biochemistry & Molecular Biology

Molecular modeling of the core of Aβ amyloid fibrils

JT Guo et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2004)

Article Multidisciplinary Sciences

Mutational analysis of the structural organization of polyglutamine aggregates

AK Thakur et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)

Article Multidisciplinary Sciences

Huntington's disease age-of-onset linked to polyglutamine aggregation nucleation

SM Chen et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)

Article Multidisciplinary Sciences

Amyloid fibers are water-filled nanotubes

MF Perutz et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)

Article Biochemistry & Molecular Biology

Solution structure of polyglutamine tracts in GST-polyglutamine fusion proteins

L Masino et al.

FEBS LETTERS (2002)

Review Biochemistry & Molecular Biology

The architecture of parallel β-helices and related folds

J Jenkins et al.

PROGRESS IN BIOPHYSICS & MOLECULAR BIOLOGY (2001)

Article Biochemistry & Molecular Biology

Polyglutamine aggregation behavior in vitro supports a recruitment mechanism of cytotoxicity

S Chen et al.

JOURNAL OF MOLECULAR BIOLOGY (2001)

Article Biochemistry & Molecular Biology

The Protein Data Bank

HM Berman et al.

NUCLEIC ACIDS RESEARCH (2000)