Journal
JOURNAL OF BIOLOGICAL SYSTEMS
Volume 17, Issue 4, Pages 547-576Publisher
WORLD SCIENTIFIC PUBL CO PTE LTD
DOI: 10.1142/S0218339009002958
Keywords
Repression and Activation; Bipolar Linear Algebra; YinYang-N-Element Bipolar Cellular Networks; Equilibrium and Non-Equilibrium Conditions; Aging and Degeneration; Simulation and Regulation
Categories
Funding
- National Natural Science Foundation of China [70621001, 70531040, 70840010]
- Chinese Ministry of Science and Technology [2004CB720103]
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Bipolar linear algebra (BLA) and YinYang-N-Element bipolar cellular networks (BCNs) are presented for equilibrium-based biological simulation and regulation at the system, molecular, and genetic levels. Bipolar fusion, interaction, oscillation, and quantum entanglement with growing, aging, degenerating, equilibrium, and non-equilibrium properties are mathematically characterized; bipolar dynamic equations with metabolic nourishing and regulating relations are formulated; global and local equilibrium conditions are established and proved. Two families of YinYang-N-Element BCNs are compared and analyzed: one family has predefined nourishing and regulation cycles following the classical YinYang-5-Element protocol in Traditional Chinese Medicine (TCM); another family has random connectivity and link weights. Applicability of the theory is illustrated in equilibrium and non-equilibrium simulation of bio-agent interaction and regulation. The significance of this work is two-fold: (1) BLA provides a unique and unifying mathematical foundation for bipolar fusion, interaction, and oscillation in biophysics and bioeconomics; (2) YinYang-N-Element BCNs provide a unique and unifying architecture for modeling equilibrium and non-equilibrium processes at the system, molecular, and genetic levels.
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