4.6 Article

Processing and Translation Initiation of Non-long Terminal Repeat Retrotransposons by Hepatitis Delta Virus (HDV)-like Self-cleaving Ribozymes

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

Structure-based Search Reveals Hammerhead Ribozymes in the Human Microbiome

Randi M. Jimenez et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2011)

Article Biochemistry & Molecular Biology

The Non-LTR Retrotransposon R2 in Termites (Insecta, Isoptera): Characterization and Dynamics

Silvia Ghesini et al.

JOURNAL OF MOLECULAR EVOLUTION (2011)

Article Biochemistry & Molecular Biology

Identification of an hepatitis delta virus-like ribozyme at the mRNA 5′-end of the L1Tc retrotransposon from Trypanosoma cruzi

Francisco J. Sanchez-Luque et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Multidisciplinary Sciences

Crystal structures of complexes containing domains from two viral internal ribosome entry site (IRES) RNAs bound to the 70S ribosome

Jianyu Zhu et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Biochemistry & Molecular Biology

HDV-like self-cleaving ribozymes

Chiu-Ho T. Webb et al.

RNA BIOLOGY (2011)

Article Biochemical Research Methods

Identification of Hammerhead Ribozymes in All Domains of Life Reveals Novel Structural Variations

Jonathan Perreault et al.

PLOS COMPUTATIONAL BIOLOGY (2011)

Review Cell Biology

Retinoic acid inducible gene-I, more than a virus sensor

Feng Liu et al.

PROTEIN & CELL (2011)

Article Evolutionary Biology

Generation of microsatellite repeat families by RTE retrotransposons in lepidopteran genomes

Wee Tek Tay et al.

BMC EVOLUTIONARY BIOLOGY (2010)

Article Biochemistry & Molecular Biology

Intronic hammerhead ribozymes are ultraconserved in the human genome

Marcos de la Pena et al.

EMBO REPORTS (2010)

Article Biochemistry & Molecular Biology

R2 Retrotransposons Encode a Self-Cleaving Ribozyme for Processing from an rRNA Cotranscript

Danna G. Eickbush et al.

MOLECULAR AND CELLULAR BIOLOGY (2010)

Review Biochemical Research Methods

Computational discovery of folded RNA domains in genomes and in vitro selected libraries

Nathan J. Riccitelli et al.

METHODS (2010)

Article Biochemistry & Molecular Biology

Ubiquitous presence of the hammerhead ribozyme motif along the tree of life

Marcos de la Pena et al.

Article Biochemistry & Molecular Biology

The HCV IRES pseudoknot positions the initiation codon on the 40S ribosomal subunit

Katherine E. Berry et al.

Article Biochemistry & Molecular Biology

The R2 mobile element of Rhynchosciara americana: Molecular, cytological and dynamic aspects

Paula Rezende-Teixeira et al.

CHROMOSOME RESEARCH (2009)

Review Cell Biology

Transposable elements in gene regulation and in the evolution of vertebrate genomes

Guillaume Bourque

CURRENT OPINION IN GENETICS & DEVELOPMENT (2009)

Article Multidisciplinary Sciences

Widespread Occurrence of Self-Cleaving Ribozymes

Chiu-Ho T. Webb et al.

SCIENCE (2009)

Article Biochemistry & Molecular Biology

Bombyx small RNAs: Genomic defense system against transposons in the silkworm, Bombyx mori

Shinpei Kawaoka et al.

INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY (2008)

Article Biochemistry & Molecular Biology

DNA-directed DNA polymerase and strand displacement activity of the reverse transcriptase encoded by the R2 retrotransposon

Anna Kurzynska-Kokorniak et al.

JOURNAL OF MOLECULAR BIOLOGY (2007)

Article Multidisciplinary Sciences

Sequence finishing and mapping of Drosophila melanogaster heterochromatin

Roger A. Hoskins et al.

SCIENCE (2007)

Article Multidisciplinary Sciences

Structural basis for ribosome recruitment and manipulation by a viral IRES RNA

Jennifer S. Pfingsten et al.

SCIENCE (2006)

Article Multidisciplinary Sciences

RNA from the 5′ end of the R2 retrotransposon controls R2 protein binding to and cleavage of its DNA target site

Shawn M. Christensen et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)

Article Multidisciplinary Sciences

A genomewide search for ribozymes reveals an HDV-like sequence in the human CPEB3 gene

Kourosh Salehi-Ashtiani et al.

SCIENCE (2006)

Article Biochemistry & Molecular Biology

Unbiased in vitro selection reveals the unique character of the self-cleaving antigenomic HDV RNA sequence

A Nehdi et al.

NUCLEIC ACIDS RESEARCH (2006)

Article Biochemistry & Molecular Biology

Antigenomic delta ribozyme variants with mutations in the catalytic core obtained by the in vitro selection method

M Legiewicz et al.

NUCLEIC ACIDS RESEARCH (2006)

Article Biochemistry & Molecular Biology

Long-term inheritance of the 28S rDNA-specific retrotransposon R2

KK Kojima et al.

MOLECULAR BIOLOGY AND EVOLUTION (2005)

Review Cell Biology

The catalytic diversity of RNAS

MJ Fedor et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2005)

Article Biochemistry & Molecular Biology

End-to-end template jumping by the reverse transcriptase encoded by the R2 retrotransposon

A Bibillo et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2004)

Article Multidisciplinary Sciences

Control of gene expression by a natural metabolite-responsive ribozyme

WC Winkler et al.

NATURE (2004)

Article Multidisciplinary Sciences

A conformational switch controls hepatitis delta virus ribozyme catalysis

AL Ke et al.

NATURE (2004)

Article Biochemistry & Molecular Biology

Peripheral regions of natural hammerhead ribozymes greatly increase their self-cleavage activity

M De la Peña et al.

EMBO JOURNAL (2003)

Article Biochemistry & Molecular Biology

Sequence elements outside the hammerhead ribozyme catalytic core enable intracellular activity

A Khvorova et al.

NATURE STRUCTURAL BIOLOGY (2003)

Article Biochemistry & Molecular Biology

Evolution of target specificity in R1 clade non-LTR Retrotransposons

KK Kojima et al.

MOLECULAR BIOLOGY AND EVOLUTION (2003)

Article Biochemistry & Molecular Biology

Ancient lineages of non-LTR retrotransposons in the primitive eukaryote, Giardia lamblia

WD Burke et al.

MOLECULAR BIOLOGY AND EVOLUTION (2002)

Article Biochemistry & Molecular Biology

The reverse transcriptase of the R2 non-LTR retrotransposon: Continuous synthesis of cDNA on non-continuous RNA templates

A Bibillo et al.

JOURNAL OF MOLECULAR BIOLOGY (2002)

Article Multidisciplinary Sciences

In vitro evolution suggests multiple origins for the hammerhead ribozyme

K Salehi-Ashtiani et al.

NATURE (2001)

Article Biochemistry & Molecular Biology

Distribution of the bilbo non-LTR retrotransposon in Drosophilidae and its evolution in the Drosophila obscura species group

D Blesa et al.

MOLECULAR BIOLOGY AND EVOLUTION (2001)

Article Biochemistry & Molecular Biology

Hammerhead-mediated processing of satellite pDo500 family transcripts from Dolichopoda cave crickets

AA Rojas et al.

NUCLEIC ACIDS RESEARCH (2000)

Article Biochemistry & Molecular Biology

A role for upstream RNA structure in facilitating the catalytic fold of the genomic hepatitis delta virus ribozyme

DM Chadalavada et al.

JOURNAL OF MOLECULAR BIOLOGY (2000)

Article Multidisciplinary Sciences

Structural diversity of self-cleaving ribozymes

J Tang et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2000)