4.4 Article

Redefining Escherichia coli σ70 Promoter Elements: -15 Motif as a Complement of the -10 Motif

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

Gains and unexpected lessons from genome-scale promoter mapping

K. S. Shavkunov et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Biophysics

Formation of the open complex by bacterial RNA polymerase - A quantitative model

Marko Djordjevic et al.

BIOPHYSICAL JOURNAL (2008)

Review Biochemistry & Molecular Biology

Anatomy of Escherichia coli σ70 promoters

Ryan K. Shultzaberger et al.

NUCLEIC ACIDS RESEARCH (2007)

Article Biochemistry & Molecular Biology

Escherichia coli RNA polymerase contacts outside the -10 promoter element are not essential for promoter melting

A Niedziela-Majka et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2005)

Article Biochemistry & Molecular Biology

enoLOGOS: a versatile web tool for energy normalized sequence logos

CT Workman et al.

NUCLEIC ACIDS RESEARCH (2005)

Article Multidisciplinary Sciences

Minimal machinery of RNA polymerase holoenzyme sufficient for promoter melting

BA Young et al.

SCIENCE (2004)

Article Biochemistry & Molecular Biology

A biophysical approach to transcription factor binding site discovery

M Djordjevic et al.

GENOME RESEARCH (2003)

Article Biochemistry & Molecular Biology

Sigma70 promoters in Escherichia coli:: Specific transcription in dense regions of overlapping promoter-like signals

AM Huerta et al.

JOURNAL OF MOLECULAR BIOLOGY (2003)

Article Biochemistry & Molecular Biology

Identification and analysis of 'extended-10' promoters in Escherichia coli

JE Mitchell et al.

NUCLEIC ACIDS RESEARCH (2003)

Article Biochemistry & Molecular Biology

Gibbs Recursive Sampler: finding transcription factor binding sites

W Thompson et al.

NUCLEIC ACIDS RESEARCH (2003)

Review Microbiology

RNA polymerase holoenzyme: structure, function and biological implications

S Borukhov et al.

CURRENT OPINION IN MICROBIOLOGY (2003)

Review Biochemistry & Molecular Biology

Bacterial RNA polymerases: the wholo story

KS Murakami et al.

CURRENT OPINION IN STRUCTURAL BIOLOGY (2003)

Review Biotechnology & Applied Microbiology

Protein family review - The sigma(70) family of sigma factors

MSB Paget et al.

GENOME BIOLOGY (2003)

Review Microbiology

Role of the RNA polymerase sigma subunit in transcription initiation

S Borukhov et al.

RESEARCH IN MICROBIOLOGY (2002)

Article Biochemistry & Molecular Biology

The TRTGn motif stabilizes the transcription initiation open complex

MI Voskuil et al.

JOURNAL OF MOLECULAR BIOLOGY (2002)

Article Multidisciplinary Sciences

Physical constraints and functional characteristics of transcription factor-DNA interaction

U Gerland et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)

Article Biotechnology & Applied Microbiology

High-throughput SELEX-SAGE method for quantitative modeling of transcription-factor binding sites

E Roulet et al.

NATURE BIOTECHNOLOGY (2002)

Article Multidisciplinary Sciences

Structural basis of transcription initiation: An RNA polymerase holoenzyme-DNA complex

KS Murakami et al.

SCIENCE (2002)

Article Biochemistry & Molecular Biology

Structure of the bacterial RNA polymerase promoter specificity sigma subunit

EA Campbell et al.

MOLECULAR CELL (2002)

Article Multidisciplinary Sciences

Function of the bacterial TATAAT-10 element as single-stranded DNA during RNA polymerase isomerization

MS Fenton et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)

Review Biochemistry & Molecular Biology

RNA polymerase: Structural similarities between bacterial RNA polymerase and eukaryotic RNA polymerase II

RH Ebright

JOURNAL OF MOLECULAR BIOLOGY (2000)

Article Biochemistry & Molecular Biology

Software for analysis of bacterial genomes

AA Mironov et al.

MOLECULAR BIOLOGY (2000)

Article Biochemical Research Methods

DNA binding sites: representation and discovery

GD Stormo

BIOINFORMATICS (2000)