4.7 Review

Genetic code flexibility in microorganisms: novel mechanisms and impact on physiology

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

A synthetic tRNA for EF-Tu mediated selenocysteine incorporation in vivo and in vitro

Corwin Miller et al.

FEBS LETTERS (2015)

Review Biochemistry & Molecular Biology

Codon Bias as a Means to Fine-Tune Gene Expression

Tessa E. F. Quax et al.

MOLECULAR CELL (2015)

Article Multidisciplinary Sciences

Recoded organisms engineered to depend on synthetic amino acids

Alexis J. Rovner et al.

NATURE (2015)

Article Multidisciplinary Sciences

Biocontainment of genetically modified organisms by synthetic protein design

Daniel J. Mandell et al.

NATURE (2015)

Article Biochemistry & Molecular Biology

Protein mistranslation protects bacteria against oxidative stress

Yongqiang Fan et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Multidisciplinary Sciences

Highly reproductive Escherichia coli cells with no specific assignment to the UAG codon

Takahito Mukai et al.

SCIENTIFIC REPORTS (2015)

Article Chemistry, Multidisciplinary

Evolving tRNASec for Efficient Canonical Incorporation of Selenocysteine

Ross Thyer et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2015)

Article Biochemistry & Molecular Biology

Revealing the amino acid composition of proteins within an expanded genetic code

Hans R. Aerni et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Chemistry, Multidisciplinary

Recoding the Genetic Code with Selenocysteine

Markus J. Broecker et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2014)

Review Biochemistry & Molecular Biology

Expanding and Reprogramming the Genetic Code of Cells and Animals

Jason W. Chin

ANNUAL REVIEW OF BIOCHEMISTRY, VOL 83 (2014)

Review Biochemistry & Molecular Biology

Expanded Genetic Code Technologies for Incorporating Modified Lysine at Multiple Sites

Tatsuo Yanagisawa et al.

CHEMBIOCHEM (2014)

Review Biochemistry & Molecular Biology

Natural and synthetic selenoproteins

Norman Metanis et al.

CURRENT OPINION IN CHEMICAL BIOLOGY (2014)

Review Biochemistry & Molecular Biology

The thioredoxin antioxidant system

Jun Lu et al.

FREE RADICAL BIOLOGY AND MEDICINE (2014)

Article Biochemistry & Molecular Biology

Bacteriophages use an expanded genetic code on evolutionary paths to higher fitness

Michael J. Hammerling et al.

NATURE CHEMICAL BIOLOGY (2014)

Article Biochemistry & Molecular Biology

Natural reassignment of CUU and CUA sense codons to alanine in Ashbya mitochondria

Jiqiang Ling et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Biochemistry & Molecular Biology

Mechanism of oxidant- induced mistranslation by threonyl- tRNA synthetase

Jiang Wu et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Biochemistry & Molecular Biology

Engineering the elongation factor Tu for efficient selenoprotein synthesis

Ken-ichi Haruna et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Multidisciplinary Sciences

Reducing the genetic code induces massive rearrangement of the proteome

Patrick O'Donoghue et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)

Article Multidisciplinary Sciences

Polyspecific pyrrolysyl-tRNA synthetases from directed evolution

Li-Tao Guo et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)

Article Multidisciplinary Sciences

A nonpyrrolysine member of the widely distributed trimethylamine methyltransferase family is a glycine betaine methyltransferase

Tomislav Ticak et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)

Article Multidisciplinary Sciences

Mycobacterial mistranslation is necessary and sufficient for rifampicin phenotypic resistance

Babak Javid et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)

Article Multidisciplinary Sciences

Stop codon reassignments in the wild

Natalia N. Ivanova et al.

SCIENCE (2014)

Article Multidisciplinary Sciences

Total Synthesis of a Functional Designer Eukaryotic Chromosome

Narayana Annaluru et al.

SCIENCE (2014)

Article Chemistry, Multidisciplinary

Rewiring Translation for Elongation Factor Tu-Dependent Selenocysteine Incorporation

Caroline Aldag et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2013)

Review Genetics & Heredity

Adaptive Translation as a Mechanism of Stress Response and Adaptation

Tao Pan

ANNUAL REVIEW OF GENETICS, VOL 47 (2013)

Review Biochemistry & Molecular Biology

The path of lysine to pyrrolysine

Joseph A. Krzycki

CURRENT OPINION IN CHEMICAL BIOLOGY (2013)

Editorial Material Multidisciplinary Sciences

CELL BIOLOGY A fable of too much too fast

Jennifer M. Hurley et al.

NATURE (2013)

Article Biochemistry & Molecular Biology

Upgrading protein synthesis for synthetic biology

Patrick O'Donoghue et al.

NATURE CHEMICAL BIOLOGY (2013)

Article Biochemistry & Molecular Biology

Selection of tRNA charging quality control mechanisms that increase mistranslation of the genetic code

Srujana S. Yadavalli et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Biochemistry & Molecular Biology

Wobble decoding by the Escherichia coli selenocysteine insertion machinery

Jianqiang Xu et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Biochemistry & Molecular Biology

Sounds of silence: synonymous nucleotides as a key to biological regulation and complexity

Svetlana A. Shabalina et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Multidisciplinary Sciences

Environmental perturbations lift the degeneracy of the genetic code to regulate protein levels in bacteria

Arvind R. Subramaniam et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Article Multidisciplinary Sciences

Expanded use of sense codons is regulated by modified cytidines in tRNA

William A. Cantara et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Article Multidisciplinary Sciences

Reversion of a fungal genetic code alteration links proteome instability with genomic and phenotypic diversification

Ana R. Bezerra et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Article Multidisciplinary Sciences

UGA is an additional glycine codon in uncultured SR1 bacteria from the human microbiota

James H. Campbell et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Article Multidisciplinary Sciences

Genomically Recoded Organisms Expand Biological Functions

Marc J. Lajoie et al.

SCIENCE (2013)

Article Multidisciplinary Sciences

Causes and Effects of N-Terminal Codon Bias in Bacterial Genes

Daniel B. Goodman et al.

SCIENCE (2013)

Article Multidisciplinary Sciences

Multiplex Genome Engineering Using CRISPR/Cas Systems

Le Cong et al.

SCIENCE (2013)

Article Biology

A serine sensor for multicellularity in a bacterium

Arvind R. Subramaniam et al.

ELIFE (2013)

Article Biochemistry & Molecular Biology

Release Factor One Is Nonessential in Escherichia coli

David B. F. Johnson et al.

ACS CHEMICAL BIOLOGY (2012)

Article Chemistry, Multidisciplinary

Crystal Structure of Methylornithine Synthase (PylB): Insights into the Pyrrolysine Biosynthesis

Felix Quitterer et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2012)

Article Biochemistry & Molecular Biology

Pyrrolysine Analogs as Substrates for Bacterial Pyrrolysyl-tRNA Synthetase in Vitro and in Vivo

Hidekazu Katayama et al.

BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY (2012)

Review Biochemistry & Molecular Biology

Translational recoding in archaea

Beatrice Cobucci-Ponzano et al.

EXTREMOPHILES (2012)

Review Multidisciplinary Sciences

RNA-guided genetic silencing systems in bacteria and archaea

Blake Wiedenheft et al.

NATURE (2012)

Article Multidisciplinary Sciences

Yeast mitochondrial threonyl-tRNA synthetase recognizes tRNA isoacceptors by distinct mechanisms and promotes CUN codon reassignment

Jiqiang Ling et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Multidisciplinary Sciences

Carbon source-dependent expansion of the genetic code in bacteria

Laure Prat et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Review Biochemistry & Molecular Biology

Reprogramming the genetic code

Jason W. Chin

EMBO JOURNAL (2011)

Article Biochemistry & Molecular Biology

Genetic analysis of selenocysteine biosynthesis in the archaeon Methanococcus maripaludis

Michael J. Hohn et al.

MOLECULAR MICROBIOLOGY (2011)

Article Multidisciplinary Sciences

The complete biosynthesis of the genetically encoded amino acid pyrrolysine from lysine

Marsha A. Gaston et al.

NATURE (2011)

Review Genetics & Heredity

Synonymous but not the same: the causes and consequences of codon bias

Joshua B. Plotkin et al.

NATURE REVIEWS GENETICS (2011)

Article Biochemistry & Molecular Biology

An unusual tRNAThr derived from tRNAHis reassigns in yeast mitochondria the CUN codons to threonine

Dan Su et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Multidisciplinary Sciences

Naturally occurring aminoacyl-tRNA synthetases editing-domain mutations that cause mistranslation in Mycoplasma parasites

Li Li et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Multidisciplinary Sciences

Precise Manipulation of Chromosomes in Vivo Enables Genome-Wide Codon Replacement

Farren J. Isaacs et al.

SCIENCE (2011)

Article Chemistry, Multidisciplinary

A Facile System for Genetic Incorporation of Two Different Noncanonical Amino Acids into One Protein in Escherichia coli

Wei Wan et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2010)

Review Biochemistry & Molecular Biology

Adding New Chemistries to the Genetic Code

Chang C. Liu et al.

ANNUAL REVIEW OF BIOCHEMISTRY, VOL 79 (2010)

Review Biochemistry & Molecular Biology

Residue-specific incorporation of non-canonical amino acids into proteins: recent developments and applications

Jeremiah A. Johnson et al.

CURRENT OPINION IN CHEMICAL BIOLOGY (2010)

Letter Genetics & Heredity

The Distinction Between Recoding and Codon Reassignment

John F. Atkins et al.

GENETICS (2010)

Article Biochemistry & Molecular Biology

In vivo requirement of selenophosphate for selenoprotein synthesis in archaea

Tilmann Stock et al.

MOLECULAR MICROBIOLOGY (2010)

Article Biochemistry & Molecular Biology

Agmatine-conjugated cytidine in a tRNA anticodon is essential for AUA decoding in archaea

Yoshiho Ikeuchi et al.

NATURE CHEMICAL BIOLOGY (2010)

Article Biochemistry & Molecular Biology

Codon reassignment in the Escherichia coli genetic code

Takahito Mukai et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Multidisciplinary Sciences

Agmatidine, a modified cytidine in the anticodon of archaeal tRNAIle, base pairs with adenosine but not with guanosine

Debabrata Mandal et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Multidisciplinary Sciences

Creation of a Bacterial Cell Controlled by a Chemically Synthesized Genome

Daniel G. Gibson et al.

SCIENCE (2010)

Review Microbiology

Selenocysteine, Pyrrolysine, and the Unique Energy Metabolism of Methanogenic Archaea

Michael Rother et al.

ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL (2010)

Review Microbiology

Aminoacyl-tRNA Synthesis and Translational Quality Control

Jiqiang Ling et al.

ANNUAL REVIEW OF MICROBIOLOGY (2009)

Review Biochemistry & Molecular Biology

The selenium to selenoprotein pathway in eukaryotes: More molecular partners than anticipated

Christine Allmang et al.

BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS (2009)

Review Biochemistry & Molecular Biology

Selenoproteins in Archaea and Gram-positive bacteria

Tilmann Stock et al.

BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS (2009)

Review Biochemistry & Molecular Biology

The many levels of control on bacterial selenoprotein synthesis

Satoko Yoshizawa et al.

BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS (2009)

Review Biochemistry & Molecular Biology

Fidelity at the Molecular Level: Lessons from Protein Synthesis

Hani S. Zaher et al.

Article Biochemistry & Molecular Biology

Translation termination in pyrrolysine-utilizing archaea

Elena Alkalaeva et al.

FEBS LETTERS (2009)

Article Biochemistry & Molecular Biology

In vivo role of three fused corrinoid/methyl transfer proteins in Methanosarcina acetivorans

Ellen Oelgeschlaeger et al.

MOLECULAR MICROBIOLOGY (2009)

Article Multidisciplinary Sciences

Programming cells by multiplex genome engineering and accelerated evolution

Harris H. Wang et al.

NATURE (2009)

Article Multidisciplinary Sciences

The appearance of pyrrolysine in tRNAHis guanylyltransferase by neutral evolution

Ilka U. Heinemann et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Article Multidisciplinary Sciences

Genetic Code Supports Targeted Insertion of Two Amino Acids by One Codon

Anton A. Turanov et al.

SCIENCE (2009)

Article Multidisciplinary Sciences

The Human SepSecS-tRNASec Complex Reveals the Mechanism of Selenocysteine Formation

Sotiria Palioura et al.

SCIENCE (2009)

Article Biochemistry & Molecular Biology

Genetically encoding Nε-acetyllysine in recombinant proteins

Heinz Neumann et al.

NATURE CHEMICAL BIOLOGY (2008)

Article Biochemistry & Molecular Biology

Characterization and evolutionary history of an archaeal kinase involved in selenocysteinyl-tRNA formation

R. Lynn Sherrer et al.

NUCLEIC ACIDS RESEARCH (2008)

Article Multidisciplinary Sciences

Structure of pyrrolysyl-tRNA synthetase, an archaeal enzyme for genetic code innovation

Jennifer M. Kavran et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Article Biochemistry & Molecular Biology

The mechanisms of codon reassignments in mitochondrial genetic codes

Supratim Sengupta et al.

JOURNAL OF MOLECULAR EVOLUTION (2007)

Article Multidisciplinary Sciences

Pyrrolysine is not hardwired for cotranslational insertion at UAG codons

Alexandre Ambrogelly et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Article Biochemistry & Molecular Biology

Natural expansion of the genetic code

Alexandre Ambrogelly et al.

NATURE CHEMICAL BIOLOGY (2007)

Article Biochemistry & Molecular Biology

In vivo contextual requirements for UAG translation as pyrrolysine

David Gordon Longstaff et al.

MOLECULAR MICROBIOLOGY (2007)

Article Biochemistry & Molecular Biology

Pyrrolysine analogues as substrates for pyrrolysyl-tRNA synthetase

Carla R. Polycarpo et al.

FEBS LETTERS (2006)

Article Multidisciplinary Sciences

Emergence of the universal genetic code imprinted in an RNA record

Michael J. Hohn et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)

Article Biochemistry & Molecular Biology

Structure of the unusual seryl-tRNA synthetase reveals a distinct zinc-dependent mode of substrate recognition

Silvija Bilokapic et al.

EMBO JOURNAL (2006)

Article Biochemistry & Molecular Biology

Characterization of a Methanosarcina acetivorans mutant unable to translate UAG as pyrrolysine

A Mahapatra et al.

MOLECULAR MICROBIOLOGY (2006)

Article Biochemistry & Molecular Biology

Loss of editing activity during the evolution of mitochondrial phenylalanyl-tRNA synthetase

H Roy et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2005)

Article Biochemistry & Molecular Biology

Structural basis for mRNA recognition by elongation factor SelB

S Yoshizawa et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2005)

Article Biochemistry & Molecular Biology

The prokaryotic selenoproteome

GV Kryukov et al.

EMBO REPORTS (2004)

Article Multidisciplinary Sciences

Direct charging of tRNACUA with pyrrolysine in vitro and in vivo

SK Blight et al.

NATURE (2004)

Article Multidisciplinary Sciences

Identification and characterization of phosphoseryl-tRNA[Ser]Sec kinase

BA Carlson et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)

Article Multidisciplinary Sciences

An aminoacyl-tRNA synthetase that specifically activates pyrrolysine

C Polycarpo et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)

Review Biochemistry & Molecular Biology

Function of genetically encoded pyrrolysine in corrinoid-dependent methylamine methyltransferases

JA Krzycki

CURRENT OPINION IN CHEMICAL BIOLOGY (2004)

Article Biochemistry & Molecular Biology

Formate dehydrogenase - a versatile enzyme in changing environments

M Jormakka et al.

CURRENT OPINION IN STRUCTURAL BIOLOGY (2003)

Article Multidisciplinary Sciences

A new UAG-encoded residue in the structure of a methanogen methyltransferase

B Hao et al.

SCIENCE (2002)

Article Multidisciplinary Sciences

Pyrrolysine encoded by UAG in Archaea: Charging of a UAG-decoding specialized tRNA

G Srinivasan et al.

SCIENCE (2002)

Review Biochemistry & Molecular Biology

Ribosome fidelity: tRNA discrimination, proofreading and induced fit

MV Rodnina et al.

TRENDS IN BIOCHEMICAL SCIENCES (2001)

Article Multidisciplinary Sciences

The accuracy of codon recognition by polypeptide release factors

DV Freistroffer et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2000)

Article Biochemistry & Molecular Biology

A novel RNA binding protein, SBP2, is required for the translation of mammalian selenoprotein mRNAs

PR Copeland et al.

EMBO JOURNAL (2000)