4.8 Article

G&T-seq: parallel sequencing of single-cell genomes and transcriptomes

Journal

NATURE METHODS
Volume 12, Issue 6, Pages 519-+

Publisher

NATURE PUBLISHING GROUP
DOI: 10.1038/nmeth.3370

Keywords

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Funding

  1. UK Wellcome Trust
  2. Belgian Research Foundation Flanders (FWO)
  3. University of Leuven (KU Leuven, Belgium) [FWO-G.0687.12]
  4. University of Leuven (KU Leuven, Belgium) (KU Leuven SymBioSys) [PFV/10/016]
  5. FWO scholarship [FWO-1.1.H28.12]
  6. UK Medical Research Council
  7. EU Seventh Framework Programme (FP7) [262055]
  8. UK Mary Gray Studentship from St. John's College, Cambridge, UK
  9. New Zealand Woolf-Fisher Trust
  10. UK Wellcome Trust Senior Investigator award
  11. Wellcome Trust Sanger Institute Clinical Ph.D. Fellowship (UK)
  12. University of Oxford Nuffield Department of Medicine Prize Studentship, UK
  13. BBSRC [BBS/E/T/000PR5885, BBS/E/T/000PR6193] Funding Source: UKRI
  14. MRC [MR/L023784/1, MC_UU_12021/1, MC_U137761446, MR/L023784/2] Funding Source: UKRI
  15. Biotechnology and Biological Sciences Research Council [BBS/E/T/000PR6193, BBS/E/T/000PR5885] Funding Source: researchfish
  16. Medical Research Council [MC_U137761446, MC_UU_12021/1] Funding Source: researchfish

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The simultaneous sequencing of a single cell's genome and transcriptome offers a powerful means to dissect genetic variation and its effect on gene expression. Here we describe G&T-seq, a method for separating and sequencing genomic DNA and full-length mRNA from single cells. By applying G&T-seq to over 220 single cells from mice and humans, we discovered cellular properties that could not be inferred from DNA or RNA sequencing alone.

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