Related references
Note: Only part of the references are listed.The pluripotent regulatory circuitry connecting promoters to their long-range interacting elements
Stefan Schoenfelder et al.
GENOME RESEARCH (2015)
Integrative analysis of 111 reference human epigenomes
Anshul Kundaje et al.
NATURE (2015)
What are super-enhancers?
Sebastian Pott et al.
NATURE GENETICS (2015)
Mapping long-range promoter contacts in human cells with high-resolution capture Hi-C
Borbala Mifsud et al.
NATURE GENETICS (2015)
SeqGL Identifies Context-Dependent Binding Signals in Genome-Wide Regulatory Element Maps
Manu Setty et al.
PLOS COMPUTATIONAL BIOLOGY (2015)
mixtools: AnRPackage for Analyzing Finite Mixture Models
Tatiana Benaglia et al.
Journal of Statistical Software (2015)
H3K4me3 Breadth Is Linked to Cell Identity and Transcriptional Consistency
Berenice A. Benayoun et al.
CELL (2014)
Control of Cell Identity Genes Occurs in Insulated Neighborhoods in Mammalian Chromosomes
Jill M. Dowen et al.
CELL (2014)
Long range regulation of the sonic hedgehog gene
Eve Anderson et al.
CURRENT OPINION IN GENETICS & DEVELOPMENT (2014)
NOTCH1-RBPJ complexes drive target gene expression through dynamic interactions with superenhancers
Hongfang Wang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Chromatin state dynamics during blood formation
David Lara-Astiaso et al.
SCIENCE (2014)
The chromatin landscape and transcription factors in T cell programming
Ellen V. Rothenberg
TRENDS IN IMMUNOLOGY (2014)
STAR: ultrafast universal RNA-seq aligner
Alexander Dobin et al.
BIOINFORMATICS (2013)
Transcriptional regulation of the Ikzf1 locus
Toshimi Yoshida et al.
BLOOD (2013)
Genome-wide Chromatin State Transitions Associated with Developmental and Environmental Cues
Jiang Zhu et al.
CELL (2013)
Master Transcription Factors and Mediator Establish Super-Enhancers at Key Cell Identity Genes
Warren A. Whyte et al.
CELL (2013)
Super-Enhancers in the Control of Cell Identity and Disease
Denes Hnisz et al.
CELL (2013)
Interactome Maps of Mouse Gene Regulatory Domains Reveal Basic Principles of Transcriptional Regulation
Kyong-Rim Kieffer-Kwon et al.
CELL (2013)
Developmental Fate and Cellular Maturity Encoded in Human Regulatory DNA Landscapes
Andrew B. Stergachis et al.
CELL (2013)
Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position
Jason D. Buenrostro et al.
NATURE METHODS (2013)
Enhancer networks revealed by correlated DNAse hypersensitivity states of enhancers
Justin Malin et al.
NUCLEIC ACIDS RESEARCH (2013)
Chromatin stretch enhancer states drive cell-specific gene regulation and harbor human disease risk variants
Stephen C. J. Parker et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Software for Computing and Annotating Genomic Ranges
Michael Lawrence et al.
PLOS COMPUTATIONAL BIOLOGY (2013)
T-bet: a bridge between innate and adaptive immunity
Vanja Lazarevic et al.
NATURE REVIEWS IMMUNOLOGY (2013)
Foxp3 Exploits a Pre-Existent Enhancer Landscape for Regulatory T Cell Lineage Specification
Robert M. Samstein et al.
CELL (2012)
STATs Shape the Active Enhancer Landscape of T Cell Populations
Golnaz Vahedi et al.
CELL (2012)
ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
Stephen G. Landt et al.
GENOME RESEARCH (2012)
The long-range interaction landscape of gene promoters
Amartya Sanyal et al.
NATURE (2012)
A map of the cis-regulatory sequences in the mouse genome
Yin Shen et al.
NATURE (2012)
The accessible chromatin landscape of the human genome
Robert E. Thurman et al.
NATURE (2012)
MEASURING REPRODUCIBILITY OF HIGH-THROUGHPUT EXPERIMENTS
Qunhua Li et al.
ANNALS OF APPLIED STATISTICS (2011)
A unique chromatin signature uncovers early developmental enhancers in humans
Alvaro Rada-Iglesias et al.
NATURE (2011)
Mapping and analysis of chromatin state dynamics in nine human cell types
Jason Ernst et al.
NATURE (2011)
Chromatin Prepattern and Histone Modifiers in a Fate Choice for Liver and Pancreas
Cheng-Ran Xu et al.
SCIENCE (2011)
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
Mark D. Robinson et al.
BIOINFORMATICS (2010)
PeakAnalyzer: Genome-wide annotation of chromatin binding and modification loci
Mali Salmon-Divon et al.
BMC BIOINFORMATICS (2010)
A flexible R package for nonnegative matrix factorization
Renaud Gaujoux et al.
BMC BIOINFORMATICS (2010)
Pioneer factors in embryonic stem cells and differentiation
Stephen T. Smale
CURRENT OPINION IN GENETICS & DEVELOPMENT (2010)
Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities
Sven Heinz et al.
MOLECULAR CELL (2010)
Role of conserved non-coding DNA elements in the Foxp3 gene in regulatory T-cell fate
Ye Zheng et al.
NATURE (2010)
GREAT improves functional interpretation of cis-regulatory regions
Cory Y. McLean et al.
NATURE BIOTECHNOLOGY (2010)
Histone H3K27ac separates active from poised enhancers and predicts developmental state
Menno P. Creyghton et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Histone modifications at human enhancers reflect global cell-type-specific gene expression
Nathaniel D. Heintzman et al.
NATURE (2009)
Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
Da Wei Huang et al.
NUCLEIC ACIDS RESEARCH (2009)
Model-based Analysis of ChIP-Seq (MACS)
Yong Zhang et al.
GENOME BIOLOGY (2008)
Identification and characterization of cell type-specific and ubiquitous chromatin regulatory structures in the human genome
Hualin Xi et al.
PLOS GENETICS (2007)
A bivalent chromatin structure marks key developmental genes in embryonic stem cells
BE Bernstein et al.
CELL (2006)
Share Paper
