Related references
Note: Only part of the references are listed.The UCSC Genome Browser database: 2014 update
Donna Karolchik et al.
NUCLEIC ACIDS RESEARCH (2014)
Ensembl 2014
Paul Flicek et al.
NUCLEIC ACIDS RESEARCH (2014)
MITIE: Simultaneous RNA-Seq-based transcript identification and quantification in multiple samples
Jonas Behr et al.
BIOINFORMATICS (2013)
The MaSuRCA genome assembler
Aleksey V. Zimin et al.
BIOINFORMATICS (2013)
Blind spots of quantitative RNA-seq: the limits for assessing abundance, differential expression, and isoform switching
Hubert Rehrauer et al.
BMC BIOINFORMATICS (2013)
iReckon: Simultaneous isoform discovery and abundance estimation from RNA-seq data
Aziz M. Mezlini et al.
GENOME RESEARCH (2013)
Streaming fragment assignment for real-time analysis of sequencing experiments
Adam Roberts et al.
NATURE METHODS (2013)
Assessment of transcript reconstruction methods for RNA-seq
Tamara Steijger et al.
NATURE METHODS (2013)
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
Daehwan Kim et al.
GENOME BIOLOGY (2013)
Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels
Marcel H. Schulz et al.
BIOINFORMATICS (2012)
An integrated encyclopedia of DNA elements in the human genome
Ian Dunham et al.
NATURE (2012)
Modelling and simulating generic RNA-Seq experiments with the flux simulator
Thasso Griebel et al.
NUCLEIC ACIDS RESEARCH (2012)
Optimizing de novo transcriptome assembly from short-read RNA-Seq data: a comparative study
Qiong-Yi Zhao et al.
BMC BIOINFORMATICS (2011)
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
Bo Li et al.
BMC BIOINFORMATICS (2011)
Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
Moran N. Cabili et al.
GENES & DEVELOPMENT (2011)
IsoLasso: A LASSO Regression Approach to RNA-Seq Based Transcriptome Assembly
Wei Li et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2011)
Inference of Isoforms from Short Sequence Reads
Jianxing Feng et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2011)
Full-length transcriptome assembly from RNA-Seq data without a reference genome
Manfred G. Grabherr et al.
NATURE BIOTECHNOLOGY (2011)
Computational methods for transcriptome annotation and quantification using RNA-seq
Manuel Garber et al.
NATURE METHODS (2011)
Sparse linear modeling of next-generation mRNA sequencing (RNA-Seq) data for isoform discovery and abundance estimation
Jingyi Jessica Li et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Fast and SNP-tolerant detection of complex variants and splicing in short reads
Thomas D. Wu et al.
BIOINFORMATICS (2010)
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
Cole Trapnell et al.
NATURE BIOTECHNOLOGY (2010)
Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs
Mitchell Guttman et al.
NATURE BIOTECHNOLOGY (2010)
Biases in Illumina transcriptome sequencing caused by random hexamer priming
Kasper D. Hansen et al.
NUCLEIC ACIDS RESEARCH (2010)
Evolution and Functions of Long Noncoding RNAs
Chris P. Ponting et al.
CELL (2009)
NCBI Reference Sequences: current status, policy and new initiatives
Kim D. Pruitt et al.
NUCLEIC ACIDS RESEARCH (2009)
Alternative isoform regulation in human tissue transcriptomes
Eric T. Wang et al.
NATURE (2008)
Alternative splicing: New insights from global analyses
Benjamin J. Blencowe
CELL (2006)
Share Paper
