Journal
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
Volume 64, Issue -, Pages 4073-4078Publisher
MICROBIOLOGY SOC
DOI: 10.1099/ijs.0.067579-0
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Funding
- National Institute of Biological Resources (NIBR) - Ministry of Environment (MOE) of the Republic of Korea (NIBR) [2013-02-001]
- Ministry of Environment (ME), Republic of Korea [NIBR201401207] Funding Source: Korea Institute of Science & Technology Information (KISTI), National Science & Technology Information Service (NTIS)
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A Gram-staining-negative, rod-shaped, red strain, HME8457(T), was isolated from a freshwater stream located in the Republic of Korea. A phylogenetic tree based on 16S rRNA gene sequences showed that strain HME8457(T) formed a lineage within the genus Pedobacter. Strain HME8457(T) was most closely related to species of the genus Pedobacter: Pedobacter daechungensis Dae 13(T) (96.4% sequence similarity), Pedobacter lentus DS-40(T) (95.3%), Pedobacter terricola DS-45T (94.9%), Pedobacter glucosidilyticus 1-2(T) (94.2%) and 'Pedobacter soyangensis' HME6451 (93.6%). The major fatty acids were iso-C-15:0 (28.8%), summed feature 3 (comprising C-16:1 omega 6c and/or C-16:1 omega 7c; 21.7%), iso-C-17:0 3-OH (7.7%) and anteiso-C-15:0 (6.2%). The only respiratory quinone was MK-7. Polar lipid analysis revealed the presence of phosphatidylethanolamine, one unidentified aminolipid and two unidentified polar lipids. Sphingolipid was present. The DNA G+C content was 33.3 mol%. On the basis of the evidence presented in this study, strain HME8457(T) represents a novel species of the genus.Pedobacter, for which the name Pedobacter rivuli sp. nov. is proposed; the type strain is HME8457(T) (=KACC 17312(T)=CECT 8291(T)).
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