4.4 Article

Multi-Component Protein - Protein Docking Based Protocol with External Scoring for Modeling Dimers of G Protein-Coupled Receptors

Related references

Note: Only part of the references are listed.
Article Multidisciplinary Sciences

Differential Stability of the Crystallographic Interfaces of Mu- and Kappa-Opioid Receptors

Jennifer M. Johnston et al.

PLOS ONE (2014)

Article Biochemistry & Molecular Biology

Molecular modeling studies give hint for the existence of a symmetric hβ2R-Gαβγ-homodimer

Andrea Strasser et al.

JOURNAL OF MOLECULAR MODELING (2013)

Article Chemistry, Medicinal

Modeling Complexes of Transmembrane Proteins: Systematic Analysis of ProteinProtein Docking Tools

Agnieszka A. Kaczor et al.

MOLECULAR INFORMATICS (2013)

Article Multidisciplinary Sciences

Structure of the human smoothened receptor bound to an antitumour agent

Chong Wang et al.

NATURE (2013)

Article Biochemistry & Molecular Biology

Crystal structure of oligomeric β1-adrenergic G protein-coupled receptors in ligand-free basal state

Jianyun Huang et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2013)

Article Multidisciplinary Sciences

Structure of the CCR5 Chemokine Receptor-HIV Entry Inhibitor Maraviroc Complex

Qiuxiang Tan et al.

SCIENCE (2013)

Article Biochemistry & Molecular Biology

Fractal dimension as a measure of surface roughness of G protein-coupled receptors: implications for structure and function

Agnieszka A. Kaczor et al.

JOURNAL OF MOLECULAR MODELING (2012)

Article Chemistry, Multidisciplinary

Structural Determinants of the Supramolecular Organization of G Protein-Coupled Receptors in Bilayers

Xavier Periole et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2012)

Article Multidisciplinary Sciences

Structure of the human κ-opioid receptor in complex with JDTic

Huixian Wu et al.

NATURE (2012)

Article Biochemical Research Methods

Assessing the Relative Stability of Dimer Interfaces in G Protein-Coupled Receptors

Jennifer M. Johnston et al.

PLOS COMPUTATIONAL BIOLOGY (2012)

Article Biochemistry & Molecular Biology

Dimerization and ligand binding affect the structure network of A2A adenosine receptor

Francesca Fanelli et al.

BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES (2011)

Article Biochemistry & Molecular Biology

Light on the structure of thromboxane A2 receptor heterodimers

Francesca Fanelli et al.

CELLULAR AND MOLECULAR LIFE SCIENCES (2011)

Review Biochemistry & Molecular Biology

Oligomerization of G Protein-Coupled Receptors: Computational Methods

J. Selent et al.

CURRENT MEDICINAL CHEMISTRY (2011)

Review Biochemistry & Molecular Biology

Oligomerization of G Protein-Coupled Receptors: Biochemical and Biophysical Methods

A. A. Kaczor et al.

CURRENT MEDICINAL CHEMISTRY (2011)

Article Multidisciplinary Sciences

Benchmarking and Analysis of Protein Docking Performance in Rosetta v3.2

Sidhartha Chaudhury et al.

PLOS ONE (2011)

Article Biochemistry & Molecular Biology

Practically Useful: What the ROSETTA Protein Modeling Suite Can Do for You

Kristian W. Kaufmann et al.

BIOCHEMISTRY (2010)

Article Pharmacology & Pharmacy

Bioinformatics and molecular modelling approaches to GPCR oligomerization

Lisa M. Simpson et al.

CURRENT OPINION IN PHARMACOLOGY (2010)

Article Biochemistry & Molecular Biology

Distinct interactions between the human adrenergic β2 receptor and Gαs-an in silico study

Andrea Strasser et al.

JOURNAL OF MOLECULAR MODELING (2010)

Article Biochemistry & Molecular Biology

ConSurf 2010: calculating evolutionary conservation in sequence and structure of proteins and nucleic acids

Haim Ashkenazy et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Biochemistry & Molecular Biology

Computational study of the heterodimerization between μ and δ receptors

Xin Liu et al.

JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN (2009)

Review Multidisciplinary Sciences

The structure and function of G-protein-coupled receptors

Daniel M. Rosenbaum et al.

NATURE (2009)

Article Multidisciplinary Sciences

Crystal structure of the ligand-free G-protein-coupled receptor opsin

Jung Hee Park et al.

NATURE (2008)

Article Biochemistry & Molecular Biology

Influence of oligomerization on the dynamics of G-protein coupled receptors as assessed by normal mode analysis

Masha Y. Niv et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2008)

Article Chemistry, Multidisciplinary

G protein-coupled receptors self-assemble in dynamics simulations of model bilayers

Xavier Periole et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2007)

Article Biochemical Research Methods

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

Weizhong Li et al.

BIOINFORMATICS (2006)

Review Chemistry, Multidisciplinary

Scalable molecular dynamics with NAMD

JC Phillips et al.

JOURNAL OF COMPUTATIONAL CHEMISTRY (2005)

Article Chemistry, Medicinal

Design and synthesis of specific probes for human 5-HT4 receptor dimerization studies

JL Soulier et al.

JOURNAL OF MEDICINAL CHEMISTRY (2005)

Article Biochemistry & Molecular Biology

Protein database searches using compositionally adjusted substitution matrices

SF Altschul et al.

FEBS JOURNAL (2005)

Article Biochemistry & Molecular Biology

MUSCLE: multiple sequence alignment with high accuracy and high throughput

RC Edgar

NUCLEIC ACIDS RESEARCH (2004)

Article Biochemistry & Molecular Biology

Comparison of site-specific rate-inference methods for protein sequences: Empirical Bayesian methods are superior

I Mayrose et al.

MOLECULAR BIOLOGY AND EVOLUTION (2004)

Article Biochemistry & Molecular Biology

Organization of the G protein-coupled receptors rhodopsin and opsin in native membranes

Y Liang et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2003)

Article Biochemistry & Molecular Biology

Structural models for dimerization of G-protein coupled receptors: The opioid receptor homodimers

M Filizola et al.

BIOPOLYMERS (2002)

Review Chemistry, Medicinal

Dimerization of G-protein-coupled receptors

MK Dean et al.

JOURNAL OF MEDICINAL CHEMISTRY (2001)

Review Multidisciplinary Sciences

Drug discovery: A historical perspective

J Drews

SCIENCE (2000)