4.7 Article Proceedings Paper

Efficient Algorithms to Explore Conformation Spaces of Flexible Protein Loops

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

Ensemble refinement of protein crystal structures: Validation and application

Elena J. Levin et al.

STRUCTURE (2007)

Review Biochemistry & Molecular Biology

Protein-ligand docking: Current status and future challenges

Sergio Filipe Sousa et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2006)

Article Biochemistry & Molecular Biology

Modeling protein conformational ensembles: From missing loops to equilibrium fluctuations

Amarda Shehu et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2006)

Article Multidisciplinary Sciences

Multiple-basin energy landscapes for large-amplitude conformational motions of proteins: Structure-based molecular dynamics simulations

Kei-ichi Okazaki et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)

Letter Biochemistry & Molecular Biology

Is one solution good enough?

N Furnham et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2006)

Article Biochemistry & Molecular Biology

Flexibility of metal binding sites in proteins on a database scale

M Babor et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2005)

Article Robotics

Inverse kinematics in biology: The protein loop closure problem

R Kolodny et al.

INTERNATIONAL JOURNAL OF ROBOTICS RESEARCH (2005)

Article Biochemistry & Molecular Biology

A hierarchical approach to all-atom protein loop prediction

MP Jacobson et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2004)

Article Chemistry, Multidisciplinary

Geometric algorithms for the conformational analysis of long protein loops

J Cortés et al.

JOURNAL OF COMPUTATIONAL CHEMISTRY (2004)

Article Chemistry, Multidisciplinary

A kinematic view of loop closure

EA Coutsias et al.

JOURNAL OF COMPUTATIONAL CHEMISTRY (2004)

Article Biochemistry & Molecular Biology

A graph-theory algorithm for rapid protein side-chain prediction

AA Canutescu et al.

PROTEIN SCIENCE (2003)

Article Biochemistry & Molecular Biology

Cyclic coordinate descent: A robotics algorithm for protein loop closure

AA Canutescu et al.

PROTEIN SCIENCE (2003)

Article Biochemistry & Molecular Biology

Ab initio construction of polypeptide fragments: Efficient generation of accurate, representative ensembles

MA DePristo et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2003)

Article Biochemistry & Molecular Biology

A divide and conquer approach to fast loop modeling

SCE Tosatto et al.

PROTEIN ENGINEERING (2002)

Article Biochemical Research Methods

Structure of Ca2+-loaded human grancalcin

J Jia et al.

ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2001)

Review Biochemistry & Molecular Biology

Modeling of loops in protein structures

A Fiser et al.

PROTEIN SCIENCE (2000)