Related references
Note: Only part of the references are listed.Combining variable neighborhood search and estimation of distribution algorithms in the protein side chain placement problem
Roberto Santana et al.
JOURNAL OF HEURISTICS (2008)
An immune algorithm for protein structure prediction on lattice models
Vincenzo Cutello et al.
IEEE TRANSACTIONS ON EVOLUTIONARY COMPUTATION (2007)
Side chain placement using estimation of distribution algorithms
Roberto Santana et al.
ARTIFICIAL INTELLIGENCE IN MEDICINE (2007)
Modelling sequential protein folding under kinetic control
Fabien P. E. Huard et al.
BIOINFORMATICS (2006)
Analyses of simulations of three-dimensional lattice proteins in comparison with a simplified statistical mechanical model of protein folding
H. Abe et al.
PHYSICAL REVIEW E (2006)
A study of density of states and ground states in hydrophobic-hydrophilic protein folding models by equi-energy sampling
SC Kou et al.
JOURNAL OF CHEMICAL PHYSICS (2006)
An evolutionary strategy for all-atom folding of the 60-amino-acid bacterial ribosomal protein L20
A. Schug et al.
BIOPHYSICAL JOURNAL (2006)
Machine learning in bioinformatics
Pedro Larranaga et al.
BRIEFINGS IN BIOINFORMATICS (2006)
Shaping up the protein folding funnel by local interaction: Lesson from a structure prediction study
G Chikenji et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
Structure-approximating inverse protein folding problem in the 2D HP model
A Gupta et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2005)
Practical lessons from protein structure prediction
K Ginalski et al.
NUCLEIC ACIDS RESEARCH (2005)
Theory of protein folding
JN Onuchic et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2004)
Quantifying the roughness on the free energy landscape: Entropic bottlenecks and protein folding rates
LL Chavez et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2004)
Unsupervised learning of Bayesian networks via estimation of distribution algorithms: An application to gene expression data clustering
JM Pena et al.
INTERNATIONAL JOURNAL OF UNCERTAINTY FUZZINESS AND KNOWLEDGE-BASED SYSTEMS (2004)
Feature selection for splice site prediction:: A new method using EDA-based feature ranking -: art. no. 64
Y Saeys et al.
BMC BIOINFORMATICS (2004)
Fast feature selection using a simple estimation of distribution algorithm: a case study on splice site prediction
Yvan Saeys et al.
BIOINFORMATICS (2003)
Growth-based optimization algorithm for lattice heteropolymers
HP Hsu et al.
PHYSICAL REVIEW E (2003)
Growth algorithms for lattice heteropolymers at low temperatures
HP Hsu et al.
JOURNAL OF CHEMICAL PHYSICS (2003)
Contact order and ab initio protein structure prediction
R Bonneau et al.
PROTEIN SCIENCE (2002)
Rotamer libraries in the 21st century
RL Dunbrack
CURRENT OPINION IN STRUCTURAL BIOLOGY (2002)
Recombinatoric exploration of novel folded structures: A heteropolymer-based model of protein evolutionary landscapes
Y Cui et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)
Fast tree search for enumeration of a lattice model of protein folding
H Cejtin et al.
JOURNAL OF CHEMICAL PHYSICS (2002)
A survey of optimization by building and using probabilistic models
M Pelikan et al.
COMPUTATIONAL OPTIMIZATION AND APPLICATIONS (2002)
Computational protein design
CM Kraemer-Pecore et al.
CURRENT OPINION IN CHEMICAL BIOLOGY (2001)
Evolutionary Monte Carlo for protein folding simulations
FM Liang et al.
JOURNAL OF CHEMICAL PHYSICS (2001)
Trading accuracy for speed: A quantitative comparison of search algorithms in protein sequence design
CA Voigt et al.
JOURNAL OF MOLECULAR BIOLOGY (2000)
A comparison of predictive measures of problem difficulty in evolutionary algorithms
B Naudts et al.
IEEE TRANSACTIONS ON EVOLUTIONARY COMPUTATION (2000)